Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01856 ATGAGTGACAGAGAAAAATTTGAGCTTGATGGAAATGAGGATcctattaattattcaactgGTATGTCTTCCGATTGGCGATTTGGGGGTGCTAACATTGCAAATGCTTCCGTGGGATTGGTTCCTATGGGAAATTCAGTGGCTGTTAGCAGAGGGGATCTGATTGGTTCTTCTACATGTTCCTCTGCTTCAATGGTAGACTCgtttggtccaaacttctggGACCATACCTCCAATGCCCAAAACTGGGGATTTTGTGACATTAATGTGCAGAATAATGGTAGCTCCTTAAACCCAATTGGTATCAGAAAAGATGGTCTTACCCTTTCAAAAGCTGGTATTGATAGAACACTTGAAATGGGTTGGAACCCAGCAAATTCTATGTTGAAAGGGGATGCCTTTCTACCGAATGGACCAGGAATACTTCCACAGAGTTTATCCCAGTTTCCAACTGATTCTGCATTTATTGAGCGTGCTGCAAGATTCTCATGCTTTAGTGGAGGGAATTTTGGTGATATGGCGAACTCGTTTGGGGTTCCCCAGTCTGTGGGTCTGTATCTTAGAAGTGGGGCTACAATGCATGGAGCACGAGATGTTCTTGCGGGCCATGGATTAAAATCACCATCTGGAGGACAATCTCAAACAAGTGATCCGAATGTCGGTGAAGCTGCCAAAGATGCGTCTCAGTCTGTTGAGCGTCTGGCTACTGAAGGAAGTGCACtcaagaatgaaaaaagaagtgaaagcCGTGTATTATCTCAAGATGAAGCAAAACAAACCATAGGTAAGTCTAATAACGGGCCTGATGGAGCTGAATCTAGTGGCGATGATGGTCAAGATGATTCCCAAATGTTGGAGGCTACCAGTGGGGAACCTTCTGCGAAAGGATTGAACtcaaagaagaggaaaagaaatgggCAGGATGTTGATAATGATAAAGCAAAAGCAGCTCCTGACTTACCAACTGAAGCTGTGAGGGATGATTCTGAGGGTCGACAGAAGGGAGACCAACAACCAACTTCAACAACCAAGGCTACTGGGAAGAATGCTAAAGAGGGGTCCAAAGCTTCTGATCAGCCAAAAGAGGAATACATACATGTTAGAGCTCGTCGTGGTCAAGCAACAAATAGCCATAGCCTTGCAGAGAGAGTCAGGAGGGAAAAAATTAGCGAAAGGATGAAATTTCTTCAAGACCTTGTACCTGGGTGCAGCAAAGTCACTGGCAAGGCAGTAATGCTAGACGAAATCATTAACTATGTACAGTCACTTCAACGGCAAGTTGAGTTTTTATCTATGAAACTTGCAACAGTAAATCCACGGCTTGATTTTAATATAGAAGGACTTCTGGCTAAAGATATTCTTCAGCAACGGCCTGGCCCTTCATCTGCACTGGGTTTTTCTCCAGATATGTCTATGGCATTTCCTCCACTACATCCTTCTCAACCAGGACTAATTCAGTCAACTCTTTCTGGCATGGCAAACTCATCCGATATCCTCCGGAGAGCCGTTCATCCGCAATTGGCACCTTTGACCGGAGGATTCAAGGAGCCTACTCAGCTACCAAATGATGTCTGGGAGGATGAGCTTCACAATGTTGTGCAGATGAGCTATGCAACAACTGCTCCCATGAGTAGCCAAGACATTGATGGTTCTGCGCCCACAGGTCAGATGAAGATTGAACTTTG 1685 0.4279 MSDREKFELDGNEDPINYSTGMSSDWRFGGANIANASVGLVPMGNSVAVSRGDLIGSSTCSSASMVDSFGPNFWDHTSNAQNWGFCDINVQNNGSSLNPIGIRKDGLTLSKAGIDRTLEMGWNPANSMLKGDAFLPNGPGILPQSLSQFPTDSAFIERAARFSCFSGGNFGDMANSFGVPQSVGLYLRSGATMHGARDVLAGHGLKSPSGGQSQTSDPNVGEAAKDASQSVERLATEGSALKNEKRSESRVLSQDEAKQTIGKSNNGPDGAESSGDDGQDDSQMLEATSGEPSAKGLNSKKRKRNGQDVDNDKAKAAPDLPTEAVRDDSEGRQKGDQQPTSTTKATGKNAKEGSKASDQPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEGLLAKDILQQRPGPSSALGFSPDMSMAFPPLHPSQPGLIQSTLSGMANSSDILRRAVHPQLAPLTGGFKEPTQLPNDVWEDELHNVVQMSYATTAPMSSQDIDGSAPTGQMKIEL 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01856 561 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 11 560 IPR024097 GO:0006355
Bva01g01856 561 MobiDBLite consensus disorder prediction 254 295 - -
Bva01g01856 561 MobiDBLite consensus disorder prediction 201 362 - -
Bva01g01856 561 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 373 423 IPR011598 GO:0046983
Bva01g01856 561 MobiDBLite consensus disorder prediction 207 223 - -
Bva01g01856 561 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 371 442 IPR036638 GO:0046983
Bva01g01856 561 SMART finulus 379 429 IPR011598 GO:0046983
Bva01g01856 561 CDD bHLH_AtBPE_like 363 448 - -
Bva01g01856 561 MobiDBLite consensus disorder prediction 296 334 - -
Bva01g01856 561 PANTHER BHLH TRANSCRIPTION FACTOR 11 560 - -
Bva01g01856 561 MobiDBLite consensus disorder prediction 238 253 - -
Bva01g01856 561 Gene3D - 370 443 IPR036638 GO:0046983
Bva01g01856 561 Pfam Helix-loop-helix DNA-binding domain 376 424 IPR011598 GO:0046983
Bva01g01856 561 MobiDBLite consensus disorder prediction 335 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01856 Bva-Chr1 19066404 19070522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01856 1 537 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 44.485 2.87e-126 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva01g01856 HLH 7.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g01856 - - gmx:100797720 805.053