Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01817 ATGCTTCTGGATAAGAATGTCACTCAGGAAACCCATTATGATGTTCTTAATGTGAAGGAAGATTCGAGCTACGAAGAAATTCGTACTAGTTACCGTAGTGCTATACTCAATTTACATCCGGATAAATTATTGAAGACATCTGAGACATCCATTAACGATCAAGCAGCAGGAGACAGATTTATAAAAGTACAAAAGGCATGGGAAATTCTCAGCAATTCAAGCTGCCGCTTGGTTTATGATAACGAGCTGCGAGGTGCAAGGCAGGATAACTTAGCTTCTGATGTTGCAGAAGATATAAGCATAGAGGATATGACAGCTGAAGAATCAGGAGAAGTGATGGAGCTCTTCTACCAGTGCCGTTGTGGTGATTACTTCTCCATAGATTCTTTGGAATTGGGTAAGATGGGGTATTCATTTTGTAGGGTTGGAACTGGGATTTCTTTACAGAATAGTGATGGTGCTATACCAGGATCAGTGATTCTTCCCTGTGGTTCTTGTTCTCTAAAAGCTCGACTAGTAATCAATGTGGAAGTTAATTG 539 0.4026 MLLDKNVTQETHYDVLNVKEDSSYEEIRTSYRSAILNLHPDKLLKTSETSINDQAAGDRFIKVQKAWEILSNSSCRLVYDNELRGARQDNLASDVAEDISIEDMTAEESGEVMELFYQCRCGDYFSIDSLELGKMGYSFCRVGTGISLQNSDGAIPGSVILPCGSCSLKARLVINVEVN 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01817 179 SUPERFAMILY CSL zinc finger 96 176 IPR036671 -
Bva01g01817 179 ProSiteProfiles dnaJ domain profile. 11 83 IPR001623 -
Bva01g01817 179 ProSiteProfiles DPH-type metal-binding (MB) domain profile. 95 175 IPR007872 -
Bva01g01817 179 SUPERFAMILY Chaperone J-domain 7 84 IPR036869 -
Bva01g01817 179 CDD DnaJ 11 72 IPR001623 -
Bva01g01817 179 Pfam DnaJ domain 11 80 IPR001623 -
Bva01g01817 179 Gene3D DPH Zinc finger 89 179 IPR036671 -
Bva01g01817 179 Pfam CSL zinc finger 98 173 IPR007872 -
Bva01g01817 179 Gene3D DnaJ domain 2 88 IPR036869 -
Bva01g01817 179 ProSitePatterns Nt-dnaJ domain signature. 60 79 IPR018253 -
Bva01g01817 179 PRINTS DnaJ domain signature 13 31 IPR001623 -
Bva01g01817 179 PRINTS DnaJ domain signature 55 75 IPR001623 -
Bva01g01817 179 PRINTS DnaJ domain signature 31 46 IPR001623 -
Bva01g01817 179 PANTHER DIPHTHAMIDE BIOSYNTHESIS PROTEIN 4 1 176 - -
Bva01g01817 179 PANTHER DPH3 HOMOLOG-RELATED 1 176 IPR044248 GO:0017183|GO:0046872
Bva01g01817 179 SMART dnaj_3 10 75 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01817 Bva-Chr1 18825043 18826866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01817 12 80 C2H2 Transcription Factor Family AT1G74250 40.580 4.11e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g01817 K17867 - gmx:100814856 270.396