Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01752 ATGAAGATTTTCGTGAAAACTCTTAAAGGCAGCCACTTCGAAATTGAAGTGAAGCCTGAAGACACGGTTGCTGATGTAAAAAAAAGCATAGAAACTGTTCAGGGTGCAGATGTTTACCCTTCTGCTCAGCAAATGCTTATCCATCAAGGGAAAGTTCTCAAAGATGGCACGACCTTGGAGGAAAATAAAGTAGCTGAAAATAGTTTTGTTGTAATTATGCTATCAAAGAGTAAAAGCTCGTCTGGAGAGGGTTCTACTACTACCACAGCTAAGGCCCCACAGACAAGTGCAGCTCCTACTCCAGCTCCGTCACCTCCAGCACCTGCTGCGGCTCCGCCTGCACCAGCACCTGCTGCAGCTGCTCCGGAAGCTGCTCCTGCTCCTGCTCCTGCTCCTATCTCATCTGGCTCTGCTGCGTCAGTACCTGATGTCTATGGGCTGGCAGCGTCTAATCTTATTGCTGGAACCAACATGGAGGAAACAATTCAGCAAATTCTTGATATAGGTGGAGGAAGTTGGGATAGGGATACTGTTGTCCGTGCTCTTCGAGCTGCGTTCAACAACCCAGAGAGAGCTATTGAATATTTGTATAGTGGTATCCCGGAGCAAGCTGATGCCCCACCTGTTGCTCGAGTACCAGCTAGTACGCAGACCACCAATTCTCCAGCTCCACAAGGGGCACAGCCAGCACCTGTTCCTTCTGGTGGACCAAATGCTAATCCCTTAGACCTCTTTCCCCAGGGTCTTCCCAATGTGGGTTCTGGTGCCGCTGGGGCAGGCAACCTTGATTTTTTGCGCAGCAGTCAACAGTTCCAAGCGTTGCGAACAATGGTGCAGGCTAATCCACAAATTTTGCAGCCTATGCTTCAAGAACTTGGGAAACAAAATCCTCATCTTATGCGATTGATCCAAGAGCATCAAACTGACTTCCTCCGTCTGATAAATGAGCCAATGGAAGGGGGCGAGGGGAATGTATTGAATCAGCTGGCTGCTGCTATGCCTCAAGCAGTAACTGTCACCCCTGAGGAGCGCCAAGCCATAGAACGCCTCGAAGCAATGGGCTTTGATCGTGCACTTGTATTGGAAGTGTACTTTGCTTGcaacaaaaatgaagaattggCTGCCAACTACCTTTTAGATCACATGCACGAGTTTGAGGAATG 1163 0.4824 MKIFVKTLKGSHFEIEVKPEDTVADVKKSIETVQGADVYPSAQQMLIHQGKVLKDGTTLEENKVAENSFVVIMLSKSKSSSGEGSTTTTAKAPQTSAAPTPAPSPPAPAAAPPAPAPAAAAPEAAPAPAPAPISSGSAASVPDVYGLAASNLIAGTNMEETIQQILDIGGGSWDRDTVVRALRAAFNNPERAIEYLYSGIPEQADAPPVARVPASTQTTNSPAPQGAQPAPVPSGGPNANPLDLFPQGLPNVGSGAAGAGNLDFLRSSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPMEGGEGNVLNQLAAAMPQAVTVTPEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFEE 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01752 387 Gene3D - 1 80 - -
Bva01g01752 387 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Bva01g01752 387 TIGRFAM rad23: UV excision repair protein Rad23 1 386 IPR004806 GO:0006289
Bva01g01752 387 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 340 381 IPR015940 -
Bva01g01752 387 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Bva01g01752 387 MobiDBLite consensus disorder prediction 78 138 - -
Bva01g01752 387 SUPERFAMILY UBA-like 156 204 IPR009060 GO:0005515
Bva01g01752 387 CDD UBA1_Rad23_plant 152 201 - -
Bva01g01752 387 PRINTS DNA repair protein Rad23 signature 354 368 IPR004806 GO:0006289
Bva01g01752 387 PRINTS DNA repair protein Rad23 signature 288 310 IPR004806 GO:0006289
Bva01g01752 387 PRINTS DNA repair protein Rad23 signature 369 384 IPR004806 GO:0006289
Bva01g01752 387 PRINTS DNA repair protein Rad23 signature 337 353 IPR004806 GO:0006289
Bva01g01752 387 Gene3D - 335 382 - -
Bva01g01752 387 SUPERFAMILY XPC-binding domain 258 324 IPR036353 GO:0003684|GO:0006289|GO:0043161
Bva01g01752 387 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 156 199 IPR015940 -
Bva01g01752 387 SMART uba_6 343 380 IPR015940 -
Bva01g01752 387 SMART uba_6 158 198 IPR015940 -
Bva01g01752 387 SUPERFAMILY UBA-like 324 385 IPR009060 GO:0005515
Bva01g01752 387 Gene3D - 151 201 - -
Bva01g01752 387 Gene3D - 253 318 IPR036353 GO:0003684|GO:0006289|GO:0043161
Bva01g01752 387 SMART CBM 260 303 IPR006636 -
Bva01g01752 387 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 386 - -
Bva01g01752 387 Pfam XPC-binding domain 262 317 IPR015360 GO:0003684|GO:0006289|GO:0043161
Bva01g01752 387 MobiDBLite consensus disorder prediction 98 129 - -
Bva01g01752 387 MobiDBLite consensus disorder prediction 210 242 - -
Bva01g01752 387 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Bva01g01752 387 CDD Ubl_Rad23 1 74 - -
Bva01g01752 387 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 386 - -
Bva01g01752 387 SMART ubq_7 1 75 IPR000626 GO:0005515
Bva01g01752 387 MobiDBLite consensus disorder prediction 78 97 - -
Bva01g01752 387 Pfam UBA/TS-N domain 343 378 IPR015940 -
Bva01g01752 387 Pfam UBA/TS-N domain 159 196 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01752 Bva-Chr1 18375536 18380359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01752 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.541 1.60e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g01752 K10839 - gmx:100809066 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01752 01 18375536 18380359 Bva01g01752 01 18375536 18380359 ECH