Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01657 ATGGGATTGCAGAACCAGCTACACGACTTTACTTCAGATTCGATTCCGCTTCTCCTCATCGCAATCATCGCCGATTGCGTCAACTACCTCCGTTCTTCCCTTCTAGCTTTCCTCCATATCTTCGGATTATCCAGATTCGAACCGCACCCCGTCGTCGACGACGGCTTCATCAGAGCCGTTGGATCGGGTTTTGCCGGCCTAATCGTCCTCGCCGAGCAGCTCAACTTCAATCGCCGCTTCTCTTACCGATACAACACCCTCGAGGCCCGCGACGGTGGCCCCGACGCCGCGACTGGATCCTCCAAGTGCATCGTTTGCTTGTGCTCGCTCAAGGATGGGGACCTGGTTCGGAAGCTATCGTGCCGCCACGTTTTTCACAAGCACTGCTTCGATGGCTGGCTCGACCGTCTGAAATTCAACTGCCCTATCTGCCGGTCGCAGCTGGTTTCCGAAGAGCGCGTGGCCCTCGCGGAGCGGCGCGTCGGCGAAGAATTTGTCTCTACGTTCTCTTTGCGGTG 518 0.5714 MGLQNQLHDFTSDSIPLLLIAIIADCVNYLRSSLLAFLHIFGLSRFEPHPVVDDGFIRAVGSGFAGLIVLAEQLNFNRRFSYRYNTLEARDGGPDAATGSSKCIVCLCSLKDGDLVRKLSCRHVFHKHCFDGWLDRLKFNCPICRSQLVSEERVALAERRVGEEFVSTFSLR 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01657 172 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Bva01g01657 172 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA2A 1 170 - -
Bva01g01657 172 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 170 - -
Bva01g01657 172 SUPERFAMILY RING/U-box 102 150 - -
Bva01g01657 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 155 IPR013083 -
Bva01g01657 172 SMART ring_2 103 144 IPR001841 -
Bva01g01657 172 Pfam Ring finger domain 102 145 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01657 Bva-Chr1 17756687 17757639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01657 1 171 C3H Transcription Factor Family AT1G15100 47.953 5.26e-47 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g01657 K16282 - zju:107413314 223.787