Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01647 ATGGATGTGTTCAACCACCAAATCAAGAAAACTCCAACCTCAGGACGAAAGAAGATCGAGATCAAAGAGCTGGACAAGAATTCCAACAAGCAAGTCACCTTCTCGAAGCGTCGTGCTGGCTTATTTAAGAAAGCCAGCGAGCTGTGTGTCTTATGCAACACTCAACTCGCCATCATTGTTTTCTCTCCAGCTGATAAACCCTTTTGCTTTGGCCAACCTAACGCCGACGCAGTTCTCCGCCGCTACCTCGGAGGAACCTTAGAGTTTGAGGCTTCTCTGGAGGCGAAGGACAATTCCTTCTCCCATGGAGAATTGAATACGAAATACGAGGAGGCAATGAGGGTGTTAGAGTTGGAGAGGAAGCGCATGGATGAGATTGAAAACCTAGCCAAAGCGTGGGACCAGGGGAACTGGTGGGACCAGCCCATTGATGACATGGACGTGGAGCAGTTGGAGCAATATACAATAGCTATGCATGAATTGAGGAGAAAGTTAACTGAGAGAGCAGATGAGTTGAGGTTCAGGTTTCCAATGCTGCCTTATGGGGCAAACCCTAATGCTACGGGTGCAGTCAACTTTACTGGTTTTCTCAACCAGATTGGTGGTAAAAAGTTTGGATTTTG 623 0.4735 MDVFNHQIKKTPTSGRKKIEIKELDKNSNKQVTFSKRRAGLFKKASELCVLCNTQLAIIVFSPADKPFCFGQPNADAVLRRYLGGTLEFEASLEAKDNSFSHGELNTKYEEAMRVLELERKRMDEIENLAKAWDQGNWWDQPIDDMDVEQLEQYTIAMHELRRKLTERADELRFRFPMLPYGANPNATGAVNFTGFLNQIGGKKFGF 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01647 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 70 IPR002100 GO:0003677|GO:0046983
Bva01g01647 207 SMART madsneu2 14 73 IPR002100 GO:0003677|GO:0046983
Bva01g01647 207 PRINTS MADS domain signature 51 72 IPR002100 GO:0003677|GO:0046983
Bva01g01647 207 PRINTS MADS domain signature 36 51 IPR002100 GO:0003677|GO:0046983
Bva01g01647 207 PRINTS MADS domain signature 16 36 IPR002100 GO:0003677|GO:0046983
Bva01g01647 207 ProSiteProfiles MADS-box domain profile. 14 74 IPR002100 GO:0003677|GO:0046983
Bva01g01647 207 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 11 173 - -
Bva01g01647 207 SUPERFAMILY SRF-like 15 84 IPR036879 GO:0003677|GO:0046983
Bva01g01647 207 Gene3D - 27 98 IPR036879 GO:0003677|GO:0046983
Bva01g01647 207 Coils Coil 109 129 - -
Bva01g01647 207 PANTHER MADS BOX PROTEIN 11 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01647 Bva-Chr1 17661362 17661985 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01647 15 166 Type I MADS-box Gene Family AT2G24840 41.026 1.69e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva01g01647 SRF-TF 2.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g01647 - - cam:101502875 216.083