LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva01g01583	ATGAATTTCTCTAAACTTGCTTCcatgttattttcattttggttcaTATGCCAAAACTTGATTCTTCTGTTCTCTTCGAACTTGACCTGCTTTCAGCCTAGTGGAGTTGCTGCTACGTTAGGAAACCAGACCGATCACTTGGCATTGCTCAAATTTAAGGCAACAATATCCAAGGATCCATATGGAACCCTTGGCTCTTGGAATAGTTCTTCCCACTTCTGCACTTGGAATGGAATCATATGCAGCCACCGACATGAAAGAGTCACAGTGTTGAATCTACAAGGATATGGGTTGCATGGACTCATATCGCCACACCTTGGCAACCTCTCTTTTCTCAGGATTCTCAACCTCCAGAACAACAATTTCAATGGTGAGATCCCACGAGAATTAGGTCGTTTATTGCGGCTACAAGAACTCATGCTTACCAACAACACCTTGGCAGGGAACATTCCTACCAACTTGACAAGCTGCTCTCAACTCAAGGGCTTATACTTGGGAAAGAATAATGTTACTGGCAAGATACCCAAGGAGATTGACTCTTTAAGCAAGCTTGAAAGATTGTTTCTTTCAACAAACATGTTGACAAGTCAAATCCCTAATTCCATAGGTCTTCAGTTCTTAGACTTGTCACAGAACAAATTGTCAGGATCAATTCCGCAACCACTGCAAGGTATTTCTACTTTAGAATACCTgaacatttcttttaacatgttGGATGGCGAAGTACCCACTAAAGGTGTCTTTCGAAATGCAAGTTCTGTAGCAGTGACAGGCAATATTAAGCTCTGTGGGGGTATTTCAGAGTTACAACTACCGCCATGCCCCATGAAAGCTATGATAAAGAGAAAACGTCAACACTTTAAACTAATAGTGGTGATAATTTGTGTGGTTGTTTTTCTGCTCCTATTGTCATCTATTCTTGCCATCTATTGcctaaggaaaagaaatagaaaatcgTCATCCTATTCACCAACAATTGACTTGTTTTCAAAGGTGTCATACCAAAGCCTATACCATGCAACTGATGGATTCTCAGATAGCAATTTGATAGGCTCTGGAAGCTTTGGCTATGTGTACAAGGGAAGGCTTGAGTCTGAAGAAGAGGTTGTTCCTATAAAGGTCCTTAACCTTCAAAGGCAAGGAGCTGACAAGAGTTTCATAACCGAATGTAATGCTCTTAGAAATGTTCGTCATAGAAATTTGATCAAGATTTTAACATGTTGCTCCAGCATAGATTACAAAGGCCAAACATTTAAAGCTCTAGTTTTTGAGTATTTGACAAATGGTTGCTTAGAGAATTGGTTGCATGGGACAAAAATTGCACAGCAGGCAAGAACAGTGGATCTTGGTCGAAGATTAAATATTGCTATTGATATTGCTTCTGCATTACATTATCTGCACATTGAATGTGAGCAACCTATTATTCACTGTGACTTAAAGCCAAGCAATATCCTTCTTGATGATGATATGGTTGCTCATGTGGGAGATTTTGGATTGGCAAGACTTCTTTCAACTATTATTGGCACCTCTGATAAGCAAACCAGCACAATTGGGATAAAGGGCACCGTTGGCTATGCTCCTCGAGACAACCTTTCACAGATTATAGACCCAGCTCTACTGCCAAGAGAATTCCAACAGACAACAACAGCACCAGCGGATGCAGAAATAGACCTGGAGAACCCAACCCCTTTACATCCTAATGTCAGGAAGTGCTTGCTTTCACTGTGTAGGATTGGACTTGCTTGTTCAGTGGAATCGCCAAATGAAAGAATGAATGTGGTCGATGTCACTGTGGAGTTGAATCTAATCAAGAAAGCTTTTCTTGCTGATGGGATCATTGGAGGCAGAGCACATGTTGCTGAAACTAGTGAAGGATTCTA	1880	0.3968	MNFSKLASMLFSFWFICQNLILLFSSNLTCFQPSGVAATLGNQTDHLALLKFKATISKDPYGTLGSWNSSSHFCTWNGIICSHRHERVTVLNLQGYGLHGLISPHLGNLSFLRILNLQNNNFNGEIPRELGRLLRLQELMLTNNTLAGNIPTNLTSCSQLKGLYLGKNNVTGKIPKEIDSLSKLERLFLSTNMLTSQIPNSIGLQFLDLSQNKLSGSIPQPLQGISTLEYLNISFNMLDGEVPTKGVFRNASSVAVTGNIKLCGGISELQLPPCPMKAMIKRKRQHFKLIVVIICVVVFLLLLSSILAIYCLRKRNRKSSSYSPTIDLFSKVSYQSLYHATDGFSDSNLIGSGSFGYVYKGRLESEEEVVPIKVLNLQRQGADKSFITECNALRNVRHRNLIKILTCCSSIDYKGQTFKALVFEYLTNGCLENWLHGTKIAQQARTVDLGRRLNIAIDIASALHYLHIECEQPIIHCDLKPSNILLDDDMVAHVGDFGLARLLSTIIGTSDKQTSTIGIKGTVGYAPRDNLSQIIDPALLPREFQQTTTAPADAEIDLENPTPLHPNVRKCLLSLCRIGLACSVESPNERMNVVDVTVELNLIKKAFLADGIIGGRAHVAETSEGF	626

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva01g01583	626	Pfam	Leucine rich repeat N-terminal domain	43	82	IPR013210	-
	Bva01g01583	626	SMART	serkin_6	344	608	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bva01g01583	626	SUPERFAMILY	Protein kinase-like (PK-like)	317	600	IPR011009	-
	Bva01g01583	626	ProSitePatterns	Protein kinases ATP-binding region signature.	350	373	IPR017441	GO:0005524
	Bva01g01583	626	Gene3D	Transferase(Phosphotransferase) domain 1	426	533	-	-
	Bva01g01583	626	Pfam	Protein kinase domain	345	505	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bva01g01583	626	Gene3D	Ribonuclease Inhibitor	44	157	IPR032675	-
	Bva01g01583	626	Pfam	Leucine rich repeat	135	194	IPR001611	GO:0005515
	Bva01g01583	626	PANTHER	OS04G0122200 PROTEIN	529	610	-	-
	Bva01g01583	626	PANTHER	OS04G0122200 PROTEIN	30	203	-	-
	Bva01g01583	626	SUPERFAMILY	L domain-like	43	264	-	-
	Bva01g01583	626	ProSiteProfiles	Protein kinase domain profile.	344	626	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bva01g01583	626	PANTHER	LRR RECEPTOR-LIKE KINASE	529	610	-	-
	Bva01g01583	626	PANTHER	LRR RECEPTOR-LIKE KINASE	203	529	-	-
	Bva01g01583	626	PANTHER	LRR RECEPTOR-LIKE KINASE	30	203	-	-
	Bva01g01583	626	Gene3D	Phosphorylase Kinase; domain 1	306	425	-	-
	Bva01g01583	626	PANTHER	OS04G0122200 PROTEIN	203	529	-	-
	Bva01g01583	626	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	474	486	IPR008271	GO:0004672\|GO:0006468
	Bva01g01583	626	Gene3D	Ribonuclease Inhibitor	163	271	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva01g01583	Bva-Chr1	17225039	17228446	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva01g01583	88	608	Receptor kinase-like Gene Family	AT3G47570	41.301	5.92e-131	407

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XII-1	Bva01g01583		Pkinase	1.5e-29	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva01g01583	-		-	aip:107615138	531.946