Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01508 ATGGTTAAGCACAACAACGTTATCCCTAATGCTCACTTTCGGAAACACTGGCAGAACTATGTGAAAACATGGTTCAATCAACCTGCTAGGAAAACCCGGAGACGACTTGCAAGACAAAAGAAAGCTGTGAAAATTTTCCCCCGGCCCACTGCTGGACCACTCCGCCCTATTGTTCATGGACAGACActgaaatataatatgaaagtGAGGGCTGGCAGGGGCTTCTCTCTAGAAGAATTGAAGGCAGCTGgcatatcaaagaaaattgctCCAACTATAGGGATAGCTGTTGATCATCGTCGGAAGAACCGTTCTTTGGAGAGTCTTCAGGGTAATGTGCAGAGGTTGAAGACATACAAGGCTAAGTTGGTTGTCTTCCCAAGACGCCCACGCAAAGTTAAGGCTGGTGATTCTGCTCCAGAGGAGCTAGCTTCAGCAACTCAAGTCCAGGGTCCTTACATGCCTATTGTACGCGAGAAGCCATCTGTGGAGCTTGTGAAAGTTACTGAAGAGATGAAATCATTCAAAGCCTACAACAAATTGCGTCTTGAGCGGACAAATCAACGTCACCTCGGTGCAAGGTTGAAGAGAGCTGCAGAGGCTGAGAAGGATGAGAAGAAGTG 623 0.451 MVKHNNVIPNAHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGISKKIAPTIGIAVDHRRKNRSLESLQGNVQRLKTYKAKLVVFPRRPRKVKAGDSAPEELASATQVQGPYMPIVREKPSVELVKVTEEMKSFKAYNKLRLERTNQRHLGARLKRAAEAEKDEKK 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01508 207 Gene3D - 167 207 - -
Bva01g01508 207 Hamap 50S ribosomal protein L13e [rpl13e]. 45 128 IPR001380 GO:0003735|GO:0005840|GO:0006412
Bva01g01508 207 Pfam Ribosomal protein L13e 7 185 IPR001380 GO:0003735|GO:0005840|GO:0006412
Bva01g01508 207 PANTHER 60S RIBOSOMAL PROTEIN L13 1 207 IPR001380 GO:0003735|GO:0005840|GO:0006412
Bva01g01508 207 ProSitePatterns Ribosomal protein L13e signature. 70 84 IPR018256 GO:0003735|GO:0005840|GO:0006412
Bva01g01508 207 PANTHER 60S RIBOSOMAL PROTEIN L13 1 207 - -
Bva01g01508 207 MobiDBLite consensus disorder prediction 187 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01508 Bva-Chr1 16613048 16615518 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01508 2 192 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 84.817 9.96e-124 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g01508 K02873 - twl:120016078 367.466