Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01482 ATGTCATCAGAACGTTCCGCCACGACGGAGGCGCCTGAGCCCCATGCGCCGCTCCTCCGTTCCCGTCAAGGGAACACTCCCACTCTCGCCCTCCTCCTCGGGCGCGCCACGGGCCGCCGTGGCCCCTCGATGCTGGTTCGGGAAACGGCCGCTCGTGAGCTCGAGGAGCGGCGAGCCGATTGGGGTTACTCGAAGCCGGTGGTGGCGCTCGACATGACGTGGAATATGACATTCGTGGTGGTGTCCATTGTCATGTTGATTTATACAGTCGATGAGAAACCTAACACGCCGATCAGGGTCTGGATCTGCGGGTATGCTCTGCAGTGCTTAATTCATGTCGTTTTGGTGTGGGTCGAGTATAGGAGGAGGAATAGAGTGGAGTTACGGAGCCGGAGGGCTGAGGACGTGGAGAGTCAAGGCGGCAACGTCGATGACGCCGAAGAGAGTGAAGACGAGGAAATTGGAGCTGCCGGCTCAGGGAATTTGTCTCGCTCGGGATACGCAAAAAAGTGTGAATCAGTGAATACCATGTTGTCATTCTTTTGGTGGATAGCTGGCTTTTATTGGGTGGTCTCTGGTGGTGATGCCCTTCTGCAAGATGCTCCACTTTTGTACTGGTTGTCTGTTGTTTTTCTGGCGTTTGATGTTTTCTTTGCCATCTTCTGTGTTGTTTTGGCTTGCTTGATTGGCATTGCCCTCTGTTGTTGTTTGCCATGCATCATTGCCATTCTCTATGCTGTTGCAGGACAGgAAGGTGCGTCAGATGCAGATCTCAGCGTCCTTCCAAAATATAGatttcaaatgtcaagcaatgAGGAAAAGCCTACTGGGGGTGCTGGAACAATGGTACCCATAGAAACGAGTAGTGGTTACTTAGCAAATGACCGCATACTCTTACCTGAGGATGCGGAATGCTGTATATGCCTCACTTCATATGAGGACGGAGTAGAGCTCCATGCTTTACCCTGCAACCATCATTTCCATTCTACGTGCATATCAAAATGGTTAAGGATGAATGCAACTTGTCCTCTCTGCAAGTTCAATATTCTTAAGGGAAACGAACAGTTGTG 1070 0.5047 MSSERSATTEAPEPHAPLLRSRQGNTPTLALLLGRATGRRGPSMLVRETAARELEERRADWGYSKPVVALDMTWNMTFVVVSIVMLIYTVDEKPNTPIRVWICGYALQCLIHVVLVWVEYRRRNRVELRSRRAEDVESQGGNVDDAEESEDEEIGAAGSGNLSRSGYAKKCESVNTMLSFFWWIAGFYWVVSGGDALLQDAPLLYWLSVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASDADLSVLPKYRFQMSSNEEKPTGGAGTMVPIETSSGYLANDRILLPEDAECCICLTSYEDGVELHALPCNHHFHSTCISKWLRMNATCPLCKFNILKGNEQL 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01482 356 MobiDBLite consensus disorder prediction 137 157 - -
Bva01g01482 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 353 IPR013083 -
Bva01g01482 356 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 10 355 - -
Bva01g01482 356 Pfam Ring finger domain 304 346 IPR001841 -
Bva01g01482 356 SMART ring_2 305 345 IPR001841 -
Bva01g01482 356 MobiDBLite consensus disorder prediction 1 22 - -
Bva01g01482 356 CDD RING-H2_RNF111_like 304 348 - -
Bva01g01482 356 PANTHER TARGET OF ERK KINASE MPK-1 10 355 - -
Bva01g01482 356 MobiDBLite consensus disorder prediction 140 154 - -
Bva01g01482 356 ProSiteProfiles Zinc finger RING-type profile. 305 346 IPR001841 -
Bva01g01482 356 SUPERFAMILY RING/U-box 295 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01482 Bva-Chr1 16342195 16345378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01482 1 355 C3H Transcription Factor Family AT1G68070 66.480 5.19e-177 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g01482 - - aip:107643865 516.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01482 01 16342195 16345378 Bva01g01482 01 16342195 16345378 ECH