Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01476 ATGGGAAAAATCAGCATTACCTTGCTAATTGATTTCTTATTCTTGTCCTCTTTGGTTGCCACCTTGCATGCCGGTGAGTTAGAAACCGAGGAATTTTGGAAAGAGCAAGCTCAATCATCTGATGTGTATTGGAAGCAAAGAGCAAAGAATGCTGAACAGGCCAATAAAAAAGCTGCTGTTATTGACCCTTATGAAGTCACTGCTAACCTCTCCTCTAATATTAACGAGATACTGAGAGGTAGCAGGAAGAGAAGTGAAAGGATGTTGTTGAGAGGAAAGAAATCTAGAGCTCCATGCCGGGCCTTCAACCCCATTGACAAATGCTGGAGATGTGACCCCAATTGGGCTGCCAACCGGCAAAGACTTGCAGATTGCGCAATGGGTTTTGGCCGGAGAACCACCGGCGGCAAGGGTGGAAGAATCTATGTTGTCACTGATTCCTCAGACAATGATTTGGTGAATCCCAAACCTGGGACCTTTCGCCACGCAGTTATACAAACTGAGCCCTTGTGGATCATCTTTGCTCGTAGCATGGTGATTAGGCTGAGCGAGGAGCTGATAATGACTTCTGACAAAACCATTGATGGGAGAGGAGCCAATATTCACATTGCAGGTGGTGCCGGTTTTACCATCCAGTACATAAATAATGTGATCATCCATGGGATTCATATTCATGATATTCATCCTGGCAATGGTGGGATGATTAGAGATTCTGTTAAACATTTTGGTTTTAGGACTAAGAGTGATGGTGATGCAATTTCCATCTTTGGCTCTGATCATATTTGGATTGACCACTGCTCATTGTCTAAAGCCACGGATGGATTAATTGATGCAATTATGGGATCCACTGCTATTACCATCTCCAACAACCAATTCATAAAACATGATGAGGTGATGCTGTTTGGTGCCAACGATAGCCACACAGAAGACAATATAATGCAAATCACAGTGGCATTCAACAACTTTGGTGAAGGATTAGTCCAAAGAATGCCAAGGTGTAGAAGGGGTTTCTTCCATGTGGTTAATAATTACTATACTCATTGGCAAAAGTATGTCATTGGTGGTAGCATGAATCCTACAATCATTAGTGAGGGCAACAGGTACATTGCCTCGGACAACATCTTTCTTAAAGAGGTCACAATGAGAGTTCTTACGCGGAAGAGCAAGTGGGAAAAATGGCAATGGAGATCAATAAACGATGAATTCCTAAATGGTGCATTTTTCACTCAATCTGGCCCTGAGGTGATGAAGGAGAAATCAAAATACGCTCAGGGTATGATCGCTGCTAATCCTGTGGCATGGGTGGATAGACTCACTCGCGATGCCGGCACCCTCTCATGCAAAGCCGGTAAGCCTTGTTA 1361 0.4364 MGKISITLLIDFLFLSSLVATLHAGELETEEFWKEQAQSSDVYWKQRAKNAEQANKKAAVIDPYEVTANLSSNINEILRGSRKRSERMLLRGKKSRAPCRAFNPIDKCWRCDPNWAANRQRLADCAMGFGRRTTGGKGGRIYVVTDSSDNDLVNPKPGTFRHAVIQTEPLWIIFARSMVIRLSEELIMTSDKTIDGRGANIHIAGGAGFTIQYINNVIIHGIHIHDIHPGNGGMIRDSVKHFGFRTKSDGDAISIFGSDHIWIDHCSLSKATDGLIDAIMGSTAITISNNQFIKHDEVMLFGANDSHTEDNIMQITVAFNNFGEGLVQRMPRCRRGFFHVVNNYYTHWQKYVIGGSMNPTIISEGNRYIASDNIFLKEVTMRVLTRKSKWEKWQWRSINDEFLNGAFFTQSGPEVMKEKSKYAQGMIAANPVAWVDRLTRDAGTLSCKAGKPC 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01476 453 Gene3D - 102 446 IPR012334 -
Bva01g01476 453 SMART amb_all 177 374 IPR002022 -
Bva01g01476 453 PANTHER PECTATE LYASE 18-RELATED 7 453 IPR045032 GO:0030570
Bva01g01476 453 Pfam Pectate lyase, N terminus 41 85 IPR007524 GO:0030570
Bva01g01476 453 SUPERFAMILY Pectin lyase-like 95 447 IPR011050 -
Bva01g01476 453 Pfam Pectate lyase 188 367 IPR002022 -
Bva01g01476 453 PANTHER PECTATE LYASE 7 453 - -
Bva01g01476 453 PRINTS Pollen allergen Amb family signature 351 370 IPR018082 -
Bva01g01476 453 PRINTS Pollen allergen Amb family signature 125 142 IPR018082 -
Bva01g01476 453 PRINTS Pollen allergen Amb family signature 185 201 IPR018082 -
Bva01g01476 453 PRINTS Pollen allergen Amb family signature 329 348 IPR018082 -
Bva01g01476 453 PRINTS Pollen allergen Amb family signature 424 447 IPR018082 -
Bva01g01476 453 PRINTS Pollen allergen Amb family signature 149 174 IPR018082 -
Bva01g01476 453 PRINTS Pollen allergen Amb family signature 393 417 IPR018082 -
Bva01g01476 453 PRINTS Pollen allergen Amb family signature 249 270 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01476 Bva-Chr1 16289229 16292111 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01476 26 453 Polysaccharide Lyase AT4G13710 55.374 1.15e-171 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g01476 K01728 - mnt:21397384 521.546