Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01403 atggggaagaagaagaagagggttTCTTCCAAGGTGTGGTGTTACTACTGCGATCGGGAATTCGACGACGAGAAGATTTTGGTTCAGCATCAGAAAGCTAAGCACTTCAAATGTCATGTCTGCCATAAGAAGCTCTCCACTGCTAGTGGCATGGCCATCCATGTCCTTCAGGTCCACAAGGAGACTGTCACCAAgGTGCCCAATGCCAAACCTGGCAGAGAGTCAACAgatattgatatatatggAATGCAAGGGATTCCACCTAACATATTGGCTGCTCATTACGGAGAGGAAGAGGATGAGGTTCCGTCAAAGGCAGCCAAAGTGGATTTACCGTCAACCCAGCTTGTAGGTGGAGTGGTGCCAGCACCATTGCCTGTAGCATATCGTCCTCAACCAACCTTGGGGACGGGGCCACCGATTTACAATCCAGCTTTACCCATGCCTCCAACAGCTTGGGCAGTCCCACCTCGACCTCAGCCTTGGTATCCACAACCTCCTGTTGGTTCAGTTCCTCCTCCTGCCCCATATGTACAGCAGCCATTATTTCCTGTGCAGAATGGTTCAACATTTTCCACCCCTTCACTGTCTACAAGTGTCCCATCAATAAGTCCAGCACTGCCTACAAATGCCCCTGTAGATGCACTGTCAGGCGTTACAGGAGGGACAGCAAGTAACTCGCATTCTTATGCTTCTGGTCCAAATACCGGTGGTCCTTCAATAGGACCACCTCCAGTAATTGCAAACAAAGCTCCTGCTCTGCAGCCTGCTGCTAATGAGGTCTATTTAGTTTGGGATGATGAGGCAATGTCCATGGAGGAAAGAAGAATGTCTCTGCCAAAATATCAGGTGCATGATGAAACTAGCCAGATGAGCTCTATAGATGCAGCCATAGACAAGAGGATACTTGAAAGCAGGCTAGCTGGACGCATGGCATTTTA 941 0.4718 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTASGMAIHVLQVHKETVTKVPNAKPGRESTDIDIYGMQGIPPNILAAHYGEEEDEVPSKAAKVDLPSTQLVGGVVPAPLPVAYRPQPTLGTGPPIYNPALPMPPTAWAVPPRPQPWYPQPPVGSVPPPAPYVQQPLFPVQNGSTFSTPSLSTSVPSISPALPTNAPVDALSGVTGGTASNSHSYASGPNTGGPSIGPPPVIANKAPALQPAANEVYLVWDDEAMSMEERRMSLPKYQVHDETSQMSSIDAAIDKRILESRLAGRMAF 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01403 313 PANTHER BNAC08G09340D PROTEIN 1 313 - -
Bva01g01403 313 SUPERFAMILY beta-beta-alpha zinc fingers 12 61 IPR036236 -
Bva01g01403 313 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Bva01g01403 313 MobiDBLite consensus disorder prediction 224 249 - -
Bva01g01403 313 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Bva01g01403 313 PANTHER ZINC FINGER PROTEIN 207 1 313 - -
Bva01g01403 313 SMART c2h2final6 12 35 IPR013087 -
Bva01g01403 313 SMART c2h2final6 36 59 IPR013087 -
Bva01g01403 313 Gene3D Classic Zinc Finger 1 66 - -
Bva01g01403 313 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01403 Bva-Chr1 15362280 15366830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01403 1 293 C2H2 Transcription Factor Family AT1G30970 60.795 3.52e-128 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva01g01403 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g01403 - - tcc:18607011 460.685