Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01310 ATGTCTCGCCTTCACAAACCTCTAAACTTCTTCAGAGTTATTCTTCCAATTACCATTGAAGAAGGAAAGCTACCACTGCCAAAAGGGTTTGGAAGTAAATATGGGAAAACCTTATCAAACATGGTTTTGATTAAGCTTCCAAATGGAGTtaaatggaaaattaattggaaaaTGCATGATGGTCAAATCTGGCTTGAGAATGGTTGGAAAGAATTTGTGAAGTTCTATGCAATTTCTATTGGGTATTTTTTGGTCTTCAAATATGAAGGAAATTCCCATTTCCAAGTTCTTATATTTGACACCAGCTGTCTAGAAATAGTCTATCCTGTCCTCCATGGcactgatgatgatgaagaaggcgaaaaaaaaattgttgaagtcATTCATGATTGCAACAAAACAAGATCAAAATCTCTAGTACCTTGTCTTAGACCTAACAAAAAAGCTAGAACCAACCCAGTTGTTGAACCAGCTTGCTCAGTTCCTGAGATGAAAGCTAAAAGCTCAAGAATTGGAAGGAAAAGTCGTGCGAAAACCGCAACCCATTTGGACATTAACGCTGCAAAGAAAAGATTCAAAGGCAATGGGGGAAGCAGTTTTATCTCTGGGAAACGTTCAAAAATTGAGACCAAGAGAAGCAAGGAGACATTTTCATTTAGAAAGCCATTCTCTTTTGATGTTGCAATGCATCCCACATACCTCACAAGAAGTTGCTTGAATTTTCCTCGCAATCACGGCATGAACTATCTTAGCAAGAACAAAGGAATGGTTATTCTTCAAGTTTCTGATGGGAAAACTTGGCCTGTCTCATACAAGTTTTCTAGTCATAGAGGCAAATTTACTAATGGTTGGTTATCATTTGTGAGGGCCAATAATCTAAGAGAGGGAGATATTTGTAGTTTTAAGATGATTGAGAGCAATGGTGTTTCATTCATGGTTTCTATTAAGAGAGCCATTGAAGTATCAACTGCTTCATTCTCACAAGGAGATTGGGCTACAAACAAGCCTTCATCAGCATTTTGTGAATA 1028 0.356 MSRLHKPLNFFRVILPITIEEGKLPLPKGFGSKYGKTLSNMVLIKLPNGVKWKINWKMHDGQIWLENGWKEFVKFYAISIGYFLVFKYEGNSHFQVLIFDTSCLEIVYPVLHGTDDDEEGEKKIVEVIHDCNKTRSKSLVPCLRPNKKARTNPVVEPACSVPEMKAKSSRIGRKSRAKTATHLDINAAKKRFKGNGGSSFISGKRSKIETKRSKETFSFRKPFSFDVAMHPTYLTRSCLNFPRNHGMNYLSKNKGMVILQVSDGKTWPVSYKFSSHRGKFTNGWLSFVRANNLREGDICSFKMIESNGVSFMVSIKRAIEVSTASFSQGDWATNKPSSAFCE 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01310 342 ProSiteProfiles B3 DNA-binding domain profile. 9 102 IPR003340 GO:0003677
Bva01g01310 342 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 5 318 - -
Bva01g01310 342 CDD B3_DNA 10 100 IPR003340 GO:0003677
Bva01g01310 342 PANTHER B3 DOMAIN-CONTAINING 5 318 - -
Bva01g01310 342 SUPERFAMILY DNA-binding pseudobarrel domain 8 102 IPR015300 -
Bva01g01310 342 CDD B3_DNA 223 317 IPR003340 GO:0003677
Bva01g01310 342 Gene3D - 4 103 IPR015300 -
Bva01g01310 342 SUPERFAMILY DNA-binding pseudobarrel domain 222 316 IPR015300 -
Bva01g01310 342 ProSiteProfiles B3 DNA-binding domain profile. 224 319 IPR003340 GO:0003677
Bva01g01310 342 Gene3D - 203 321 IPR015300 -
Bva01g01310 342 Pfam B3 DNA binding domain 19 101 IPR003340 GO:0003677
Bva01g01310 342 Pfam B3 DNA binding domain 229 318 IPR003340 GO:0003677
Bva01g01310 342 SMART B3_2 10 102 IPR003340 GO:0003677
Bva01g01310 342 SMART B3_2 225 319 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01310 Bva-Chr1 14218351 14219969 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01310 10 317 B3 DNA Binding Superfamily AT3G18990 29.619 1.26e-42 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bva01g01310 B3 4.7e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g01310 - - jre:108998184 206.453