Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01309 ATGGACTTTCTGAATGCTATTTACTTCTTGAGGAGAATTCGTTCTCATAATCTTGAAGAAGGAAAACTACAAATTCCTAAAAAGTTTGTGAGGAAATATGGCAAGGGTTTGTTGAATCCACTAGTTCTTCAGCTTCCAAATGGTTCTAAATGGGTTGTTCATTgggaaaaatgtaaaaatcaaACCTTTCTAGAAAAGGGGTGGAGGAAATTTGCAGTGGAATGTTCTCTAGCTCCTGGCCATCGCCTTCTTTTCAGATATGAAAAAGGTTCCATTTTTCATGTGCTCATATTTGATAGAACTtccttacaaataaaatacccAGAAAAGAAGAAGCCTGAGAAGGCCAAAAGCTCTACAAGAAAGAAGCGTGCTGGGAAGCGAGCTGGAAATGGCAAAGGGAATTTTCCTCTTGAGAAGTTTCCAAAAtatggaggaagaagaaaagggaaagtGTCTAATACTAAGAAGAGTAGTGACCTTGAGAAAGCTAGTCAGTTTCGTTCTGAAAATCCCCGTTTCTCTGTTGTCATGCAACCTTCATATGTCAACAGATATATCCTAAATCTGCCCTCTAATTTTTCCAAACAACATATGGGAGCAAAAAATGGTTGTGCTTCTCTTATGGTATCTGGGGAATCTAGAACTTGGACTATCAAGTACCATTTTAACTTGGCCACTAAGCAATCTATTCTTACCACTGGTTGGAAGGCATTTGCAAGggacaacaaattaaaagttgGTGACATTTGTGTTTTCGAGCTGATAAATAGAATTGACATGTCATTTGTTGTTACCATTTCCCACACGAGAGAAGGATCAATTTGCCCCCAGTCACAAGCTAAAAGTGCAGCCCCATCTGAGATAGACAGAGGGCGATTAAGAAAGCGCAAATCAGACGCAGAGGGAAGGTCAAGTGCATGTGATGCTGATTTCTTACAAGAAAGAGCCATAAAACATGGAAAGTTTGAACCTCTTGACAATAGGCAGCCAATGCCAGCTAGTTATTCAAATGAAGCACTCAATAGCTCTTGCAATTTGAATCCTCTCCTTAAAATTGTTATTCGCCCTTCATATGTGGGCAAAACTGCCTACTTGAATTTTCCCTCTAATTTTTCCTCACAGCATATGGGAGAAAAAGGTTTTATTTCTCTTCGACTATCTGACGATTTAAGAACTTGGACCATCAAGTACTGTTCTAACGTGGCCACTAAGCAGTCTATGCTTACAAGTGGCTGGAGGTCATTTGCAAGCGACAACAAATTGAAAGTTGGAGATGTTTGTGTCTTTGAGCTGATTAATAGCATTGAGATATTATTCAATGTTTCCATTTCCCGTGCTGGAGAAGAATTAAACTGCCCCCAGCCACAAGCTAAAAGTGCAGCCCCATCTGAGATAGACAGAGGGCGATTAAGAAAGCGCAAATCAGACGCAGAGGGAAGGTCAAGTGCATGTGATGCTGATTTCTTACAAGAAAGAGGCATAAAAAACAGAAAGTTTGAACCTCTTGACAATAGGCAGCCAATGCCAGCTAGTTATTCAAATGAAGCACTCAATAGCTCTTGCAATTTGAATCCTCTCCTTAAAATTGTTATTCGCCCTTCATATGTGGGCAAAACTGCCTACTTGAATTTTCCCTCTAATTTTTCCTCACAGCATATGGGAGAAAAAGGTTTTATTTCTCTTCGACTATCTGACGATTTAAGAACTTGGACCATCAAGTACTGTTCTAACTTGGCCACTAAGCAGTCTATGCTTACTAGTGGCTGGAGGTCCTTTGCAAGCGACAACAAATTGAAAGTTGGAGATGTTTGTGTCTTTGAGCTGATTAATAGCATTGAGATGTTATTCAATGTTTCCATTTCCCGTGCTGGAGAAGAATTAAACTGCCCCCAGCCACAAGCTGAAAGATCAGACCCGCCTGAAGCAGATCAAGGGCAACTCAGAAAACGCAACACTATAAAGCAAAGGTCCAGTGGACTAAATGCTGAtatggaagaaagaaacactGGCAGAGGCATGAAGTTCCAAAAACTCGGAGATGTTGAGAGTAGGCAGGCAACACCAGCTAATTACACAAATAAAGCCCTAAGAAGCTCTTGCAATGTCACTTCCGAAATTCCATCCTTTACAGTTGCTATGAGGCCTGCATATATTTCTGGAAGGGCACACTTGTATATACCATTTGACTTTGCAGAAAGATATCTGAGACTTGAAAAAGATAATGGAGATGCCATCCTTCAGCTTCCAAATGGAAAAGTTTGGTCTGTTCAGTACAAGTGCAGGAGAGGAAAGATAGTGGAATTCATCTCTGGATGGAAAAATTTTATGGTGGACAATAAATTGGAAGTAGGTGATGCCTGCATCTTTTATCTCATTGATGAAATCAAAATCACACTACAAGTGATACTCCTCCGAGGCAATGCAAGTTCTGCTTCCTTTCCTTCTCCAGAATCAGCTCGCTGTAGTAGTGCTGATGAAGTTTTTAACCAGAAAAGCACAGAAGCTGTAATTAATAAAGGTAGCAGTAGCAATCATGTCCCGGATGGATCTTCATCGCATTGTTGCAGCAATCCTTCCCAGGATCAAAGAGGTGGGTTGGCCATTAATCCATCTTCAACTTTGAGCAATTCTAAAGTccacaaaatttttgaagctGCCGGAAAATCCATCCCCAAGAATCCCTTCTTCACCTTTAACATCAGGACAGCTACAATGATGCATAACATACCAAATGGCTTCATCCTGAGTTATCTGAAAGACAAAGCAAATGTATCACTCCGAGCCGGGAACAAAACCTGGCCTGTAAAGCTGATCTATTATCCAAAGCATTTGTATGGAAGGTTCTCTGCCGGTTGGCCTGCGTTTGTGAGGGAATGCAAGTTGCAGATTGGTGATGTTTGTATCTTTGAGCTGATTAACAAAGATGATGCAGTGCTGGAAGTTTCTATACTTAAGACTTCTACAAGCTATTG 2975 0.3923 MDFLNAIYFLRRIRSHNLEEGKLQIPKKFVRKYGKGLLNPLVLQLPNGSKWVVHWEKCKNQTFLEKGWRKFAVECSLAPGHRLLFRYEKGSIFHVLIFDRTSLQIKYPEKKKPEKAKSSTRKKRAGKRAGNGKGNFPLEKFPKYGGRRKGKVSNTKKSSDLEKASQFRSENPRFSVVMQPSYVNRYILNLPSNFSKQHMGAKNGCASLMVSGESRTWTIKYHFNLATKQSILTTGWKAFARDNKLKVGDICVFELINRIDMSFVVTISHTREGSICPQSQAKSAAPSEIDRGRLRKRKSDAEGRSSACDADFLQERAIKHGKFEPLDNRQPMPASYSNEALNSSCNLNPLLKIVIRPSYVGKTAYLNFPSNFSSQHMGEKGFISLRLSDDLRTWTIKYCSNVATKQSMLTSGWRSFASDNKLKVGDVCVFELINSIEILFNVSISRAGEELNCPQPQAKSAAPSEIDRGRLRKRKSDAEGRSSACDADFLQERGIKNRKFEPLDNRQPMPASYSNEALNSSCNLNPLLKIVIRPSYVGKTAYLNFPSNFSSQHMGEKGFISLRLSDDLRTWTIKYCSNLATKQSMLTSGWRSFASDNKLKVGDVCVFELINSIEMLFNVSISRAGEELNCPQPQAERSDPPEADQGQLRKRNTIKQRSSGLNADMEERNTGRGMKFQKLGDVESRQATPANYTNKALRSSCNVTSEIPSFTVAMRPAYISGRAHLYIPFDFAERYLRLEKDNGDAILQLPNGKVWSVQYKCRRGKIVEFISGWKNFMVDNKLEVGDACIFYLIDEIKITLQVILLRGNASSASFPSPESARCSSADEVFNQKSTEAVINKGSSSNHVPDGSSSHCCSNPSQDQRGGLAINPSSTLSNSKVHKIFEAAGKSIPKNPFFTFNIRTATMMHNIPNGFILSYLKDKANVSLRAGNKTWPVKLIYYPKHLYGRFSAGWPAFVRECKLQIGDVCIFELINKDDAVLEVSILKTSTSY 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01309 991 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 154 269 - -
Bva01g01309 991 SUPERFAMILY DNA-binding pseudobarrel domain 893 980 IPR015300 -
Bva01g01309 991 SUPERFAMILY DNA-binding pseudobarrel domain 168 267 IPR015300 -
Bva01g01309 991 MobiDBLite consensus disorder prediction 288 305 - -
Bva01g01309 991 CDD B3_DNA 13 99 IPR003340 GO:0003677
Bva01g01309 991 ProSiteProfiles B3 DNA-binding domain profile. 8 101 IPR003340 GO:0003677
Bva01g01309 991 Gene3D - 511 626 IPR015300 -
Bva01g01309 991 Gene3D - 875 989 IPR015300 -
Bva01g01309 991 Gene3D - 151 272 IPR015300 -
Bva01g01309 991 Gene3D - 690 808 IPR015300 -
Bva01g01309 991 Gene3D - 334 449 IPR015300 -
Bva01g01309 991 MobiDBLite consensus disorder prediction 109 166 - -
Bva01g01309 991 CDD B3_DNA 910 986 IPR003340 GO:0003677
Bva01g01309 991 PANTHER B3 DOMAIN-CONTAINING 640 806 - -
Bva01g01309 991 PANTHER B3 DOMAIN-CONTAINING 454 624 - -
Bva01g01309 991 PANTHER B3 DOMAIN-CONTAINING 5 150 - -
Bva01g01309 991 PANTHER B3 DOMAIN-CONTAINING 307 447 - -
Bva01g01309 991 PANTHER B3 DOMAIN-CONTAINING 831 986 - -
Bva01g01309 991 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 640 806 - -
Bva01g01309 991 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 5 150 - -
Bva01g01309 991 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 831 986 - -
Bva01g01309 991 SUPERFAMILY DNA-binding pseudobarrel domain 704 803 IPR015300 -
Bva01g01309 991 SUPERFAMILY DNA-binding pseudobarrel domain 525 623 IPR015300 -
Bva01g01309 991 ProSiteProfiles B3 DNA-binding domain profile. 528 625 IPR003340 GO:0003677
Bva01g01309 991 MobiDBLite consensus disorder prediction 465 482 - -
Bva01g01309 991 SUPERFAMILY DNA-binding pseudobarrel domain 348 446 IPR015300 -
Bva01g01309 991 MobiDBLite consensus disorder prediction 276 307 - -
Bva01g01309 991 ProSiteProfiles B3 DNA-binding domain profile. 173 271 IPR003340 GO:0003677
Bva01g01309 991 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 454 624 - -
Bva01g01309 991 SUPERFAMILY DNA-binding pseudobarrel domain 7 100 IPR015300 -
Bva01g01309 991 MobiDBLite consensus disorder prediction 629 673 - -
Bva01g01309 991 SMART B3_2 9 101 IPR003340 GO:0003677
Bva01g01309 991 SMART B3_2 528 625 IPR003340 GO:0003677
Bva01g01309 991 SMART B3_2 710 808 IPR003340 GO:0003677
Bva01g01309 991 SMART B3_2 174 271 IPR003340 GO:0003677
Bva01g01309 991 SMART B3_2 896 988 IPR003340 GO:0003677
Bva01g01309 991 SMART B3_2 351 448 IPR003340 GO:0003677
Bva01g01309 991 PANTHER B3 DOMAIN-CONTAINING 154 269 - -
Bva01g01309 991 Pfam B3 DNA binding domain 908 986 IPR003340 GO:0003677
Bva01g01309 991 Pfam B3 DNA binding domain 174 267 IPR003340 GO:0003677
Bva01g01309 991 Pfam B3 DNA binding domain 11 100 IPR003340 GO:0003677
Bva01g01309 991 Pfam B3 DNA binding domain 531 621 IPR003340 GO:0003677
Bva01g01309 991 Pfam B3 DNA binding domain 354 437 IPR003340 GO:0003677
Bva01g01309 991 Pfam B3 DNA binding domain 710 805 IPR003340 GO:0003677
Bva01g01309 991 MobiDBLite consensus disorder prediction 453 484 - -
Bva01g01309 991 CDD B3_DNA 349 446 IPR003340 GO:0003677
Bva01g01309 991 ProSiteProfiles B3 DNA-binding domain profile. 919 988 IPR003340 GO:0003677
Bva01g01309 991 MobiDBLite consensus disorder prediction 840 862 - -
Bva01g01309 991 ProSiteProfiles B3 DNA-binding domain profile. 351 448 IPR003340 GO:0003677
Bva01g01309 991 ProSiteProfiles B3 DNA-binding domain profile. 710 808 IPR003340 GO:0003677
Bva01g01309 991 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 307 447 - -
Bva01g01309 991 CDD B3_DNA 708 795 IPR003340 GO:0003677
Bva01g01309 991 CDD B3_DNA 526 623 IPR003340 GO:0003677
Bva01g01309 991 CDD B3_DNA 172 267 IPR003340 GO:0003677
Bva01g01309 991 Gene3D - 5 102 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01309 Bva-Chr1 14211357 14216502 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01309 874 988 B3 DNA Binding Superfamily AT3G18990 31.667 2.66e-11 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bva01g01309 B3 4.9e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g01309 - - egr:104452869 291.582