Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01308 ATGTCTTCCCTTCACAATCCTGTAAACTTCTTCAGAATTATTCTTCCATTTACCCTTGAGCGAGGAAAGCTTCCACTTCCTAAAGGATTTGGGAGGAAATATGAGACAACCTTATCAAGCTCGGTATTGATTAAGCTTCCAAATGGAGGTAAATGGGAAATGAATTGGACAATGCATGATGGTCAAATCTGGTTTGAGAATGGTTGGAAAGAATTTGTGAAGTTCTATTCCATTTCTGTTGGGTATTTTTTGGTCTTCAAATATGATGGAAATTCCCATTTCCAAGTGCTTATATTTGACACCAGCTGTCTAGAAATAGCCTATCCTGTTCTTGgcattgatgatgatgaaagcaACAAAAGTGATTCCGTTGAAGTCATTCATGGATGCAACAAAGCAAGACAAAAATCACCAGTACCTTGTTCTAGACCTCACAAATTAGCTAGAACCAACCCAGTTGCAGACACTGATTGTTTTGATCATTTGGACCATAATGCTGAAAGCTCAAGAATTGGAAGGAAAAGACGGGAGAAAATTCATACCCGTTTGGACATTGACTCTGCACAGAAAAGATTCAAAGGCAATGGTGAAGATAGTTTTAACTTTGAAAAACATCCAAAACGTGAGATCAAGAGCAGCAAGGAGCCATTATCATTTCAAAATCTGTTCTCTTTTGATGTTCAAATGTATCGCACTTACCTCACAACAAATTGCTTGTGTTTGCCCCGCAATCATGGCATGAATTGTCTAAGCAAGAACGAAGGACCTATTATCCTTCGAGTCTCTGATGAGAAAAATTGGCCTGTTTCATACAAGTTCAGTAATGGTAGAGGCAGGCTTACTAATGTTTCTATTCGGCGAGTCaatgaaatatcaaattcTCCATTATCACAAgGAGAGTGGGCTACAAAGAAGCCTTCATCAGTCTTTCATGAACAGGTTCCTCAAATGAAACCAGTTTGCTCTAGTCCTCATATGAAAGCTAAAGTCTCAAGAGTTGATAGGAGAAAGCTGGAGAAAACTCAGACCCATTTGGACACTGATGCTGCAGGGAAAAGATTCAAAGAATATGAGACCAATAGAAGCAAGGAGccattatcaattaaaaagccATTCGCTTTTGATGTTGAAATGCATCACACTTTCCTCACAAGAAATCTCTTGTATTTTCCCTACAAACGTGGCATCAACTATCTAAGCATGAACGAAGAAACTGTTATCCTTCAAGTCTCTGATGGGAAAACTTGGCCTGTCTCATACAAGTTTAGTAATGGTAGAGGCAAACTTACCAATGGTTGGGTATCATTTGTGAGGGTCAACAATCTGAAAGAGGGAGATGTTTGTAGTTGTAAGATGATTGAGAGTAATAGTGATCCATTCATAGTTTCTATTTGGCGAGTCAATGAAGTATCAACTACTCCAGCATCACAAgGCAATGGGGGAGGCAGTTTTTACTCTGGGAAACATTCAAAATGTGAGACCAAGAGAGGCAAGCAGACATTATCATTTGAAAAGCCGTTATCTTTTGATGTTCAAATGTATCGCACATACCTGACAACAAATTGCTTGCATTTGCCCCACAATCATGGCATGACTTGTCTAAGCAAGAACGAAGGAACTATTATCCTTCGAGTCTCTGATGAGAAAACTTGGCCTATTTCATACAAGTTCAGCAATGGTAGAGGCAGGCTTACTACTGGTTGGTTATCATTTGTGAGGGAAAACAATCTAAAAAGGGGAGATGTTTGTAACTTTAAGATAATTGAGAGCAATGGTATTTCATTCGTAGTTTACATTCGGCGAGTTaatgaaatatcaaattcTCCATTATCACAAgGTGAGGGGGCTACAAACAAGCTTTCATCAACCTTTAATGAACAGGTTCCCCCAAGAATGCATGTAAAATCTGAAGTACAAAAAGCTTGCAGTCAATTTAAATCAGATAATGGCTTTCCTATCTTCATTAGGAGTTGTCTTTTGGAAAATACAAGGCCGAGCATACCAATTGATTTCATCAGGAGGTATATTAAACATAATGAGCAATGTGTGATCCTGCAAGTTGGGCGAAAATCATTCCTCGTGAAGCTGGCGTATAATCCAAACAAATCATATGCTAGGTTCACCACTGGTTGGTCTTCATTTGTTGGAGAATGTGGCTTGAAGGCTGGGGATGTTTGTCATTTTCAGCTAatagatgaagatgaaggtAAACTAGTTCTAAAGGTTTCAATTGAAAGGAACATTGACCGAGATGCTTA 2258 0.3747 MSSLHNPVNFFRIILPFTLERGKLPLPKGFGRKYETTLSSSVLIKLPNGGKWEMNWTMHDGQIWFENGWKEFVKFYSISVGYFLVFKYDGNSHFQVLIFDTSCLEIAYPVLGIDDDESNKSDSVEVIHGCNKARQKSPVPCSRPHKLARTNPVADTDCFDHLDHNAESSRIGRKRREKIHTRLDIDSAQKRFKGNGEDSFNFEKHPKREIKSSKEPLSFQNLFSFDVQMYRTYLTTNCLCLPRNHGMNCLSKNEGPIILRVSDEKNWPVSYKFSNGRGRLTNVSIRRVNEISNSPLSQGEWATKKPSSVFHEQVPQMKPVCSSPHMKAKVSRVDRRKLEKTQTHLDTDAAGKRFKGNGGGSFYSGKHSKCETKRGKQTLSFEKPLSFDVQMYRTYLTTNCLHLPHNHGMTCLSKNEGTIILRVSDEKTWPISYKFSNGRGRLTTGWLSFVRENNLKRGDVCNFKIIESNGISFVVYIRRVNEISNSPLSQGEGATNKLSSTFNEQVPPRMHVKSEVQKACSQFKSDNGFPIFIRSCLLENTRPSIPIDFIRRYIKHNEQCVILQVGRKSFLVKLAYNPNKSYARFTTGWSSFVGECGLKAGDVCHFQLIDEDEGKLVLKVSIERNIDRDA 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01308 630 SMART B3_2 387 481 IPR003340 GO:0003677
Bva01g01308 630 SMART B3_2 529 626 IPR003340 GO:0003677
Bva01g01308 630 SMART B3_2 10 102 IPR003340 GO:0003677
Bva01g01308 630 ProSiteProfiles B3 DNA-binding domain profile. 9 102 IPR003340 GO:0003677
Bva01g01308 630 SUPERFAMILY DNA-binding pseudobarrel domain 384 481 IPR015300 -
Bva01g01308 630 CDD B3_DNA 10 100 IPR003340 GO:0003677
Bva01g01308 630 SUPERFAMILY DNA-binding pseudobarrel domain 8 102 IPR015300 -
Bva01g01308 630 CDD B3_DNA 380 479 IPR003340 GO:0003677
Bva01g01308 630 Gene3D - 203 285 IPR015300 -
Bva01g01308 630 Gene3D - 366 483 IPR015300 -
Bva01g01308 630 Gene3D - 510 628 IPR015300 -
Bva01g01308 630 ProSiteProfiles B3 DNA-binding domain profile. 528 624 IPR003340 GO:0003677
Bva01g01308 630 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 504 624 - -
Bva01g01308 630 ProSiteProfiles B3 DNA-binding domain profile. 386 481 IPR003340 GO:0003677
Bva01g01308 630 PANTHER B3 DOMAIN-CONTAINING 4 278 - -
Bva01g01308 630 PANTHER B3 DOMAIN-CONTAINING 332 480 - -
Bva01g01308 630 PANTHER B3 DOMAIN-CONTAINING 504 624 - -
Bva01g01308 630 CDD B3_DNA 542 624 IPR003340 GO:0003677
Bva01g01308 630 Pfam B3 DNA binding domain 19 101 IPR003340 GO:0003677
Bva01g01308 630 Pfam B3 DNA binding domain 533 620 IPR003340 GO:0003677
Bva01g01308 630 Pfam B3 DNA binding domain 390 480 IPR003340 GO:0003677
Bva01g01308 630 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 332 480 - -
Bva01g01308 630 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 4 278 - -
Bva01g01308 630 Gene3D - 4 103 IPR015300 -
Bva01g01308 630 SUPERFAMILY DNA-binding pseudobarrel domain 535 613 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01308 Bva-Chr1 14200228 14205280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01308 387 483 B3 DNA Binding Superfamily AT3G18990 33.673 4.27e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bva01g01308 B3 3.1e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g01308 - - pavi:110753026 219.164