Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01302 ATGGCTTCCCATCGTCATCAACAGAAAGCTGTCCATTTCTTTAAGGTTATTCTGAAATGTATGCTTAGAGATGGAGTTCTTAGGATTCCAAGCgattttacaagaaaatatggaGGTGATCTAAAAAATCCAGTGTTTCTTAAGCCTCCCGATGGCACTGAATGGAAAATATATTGGGAAAAACATGATGATGGTGACATTTGGTTCGAGAAGGGTTGGAAAGAGTTTGCAACACATTATTCTCTTGATCATTggtatttcattatatttaaatatgaaggaACTTGCAATTTGGAAGTAATCATATTTAACATGGCCGCCATAGAAATAGAGTATCCTTCCCATGTCACTgatgaagaaaattacaatCTTGGAAAGGACAGTGATGATTCAGTTGAATTTTTGGGTGAGGGACCTACATATCCAAATACTAGATTAAGATCATCATTGTCAAATCCCCAACCCCTTAAAAGATTAAGAAATGGAAAGGTTAGAGTTGCCCAAAGAAGCTCTGATCTGAAGAAGTTGGGTGAGGGACCTTCATTTCAGAAAGCTAGACCAAGATCACCATTACCTCATGCCCAAACCCTTAAGAAATTGAGAAGTGGCAAGACTATTGTTGCTGAAAGAAGCTCTAATCTGAAGAAATGCCCATTACCGCCTATTCGTCCTTGTAAGAAAATGAGATCTTGTACAAATGGAGAAGATGGAAGTACCTCCAGCTTGCAAAAGAAGCCAATCAATGGAGAACTAATTCAAGTGGAAGGTAGTAGCAATTATTCCACTAAGAAATGCTCAAATTCCCTGGCTATTACTATTAGAAGGAGAAAACCATTAACAGAAGTTGAAAAAGCTAGAGCCTTGCAGAGAGTCATTACTTTCAGTTCTAAATATCCTCATTTCAAGCGTGTCATGCAGCCATCTTATATTTCAAGACCTTACTTGAGAGTTCCACCGAAATTTTGGAAACAACacttgaagaagaagcaaggAGCTGTCCTGCTTCAAGCCTTGGATGGGAGAACTTGGTCTAGTAGGTACAGAGTTGGTTCATTTGCCGATAAATTGTACATACCTGGCTGGACAGCATTTGCAAAAGACAATGTTTTGGAAGTGGGTGATGTTTGTGTGTTTGAGTTCATCCAGAGAACCATAGCTACAATTCGAGTAACAATTTCAAGACATGAACAACTTTCTTGTCTTGTGAATTCAGTTGAAAGGGTTAAAGGTaatgcaagaaagaaatcacCGTTACTGCCTCTTCATCCTTGTAAGAAAATGAGAGCATGTAAAAATGATGAAGTTGAAAGCACCTCCAATCTGCAAAAGAAGCCAATCCATGGAGAACTAATTCAACCGGAAGGGAGAAGCAAATTTTCTACTAAGAAATGCTCAAATTCCCTAGCTATTGCAAGGAGCAAACCATTAACTGAAGTTGAAAAAGCTAGAGCATTGCAGAGAGTCAGTGCTTTCAGTTCTGAATATCCTCATTTCAAGCGTGTCATGCAGCCATCATATGTTTCTAAACATCACTTGGTAATTCCATTACAATTTTGGAAACAACACTTGAAGAAGCGAAGAGATATTCTCCTCCAAGCCTTGGATGGGAGAACTTGGCATGCTAGGCACAAAGTTGGTTTTAGCAATAAAGCTTTCTTATCTGGGTGGGGAGCATTTGCAAAAGACAATTATGTGGAAGTGGGAGATGTTTGCGTTTTTGAGCTCATCCAGAGAACCAAAGCTACACTTCGAGTAACAATTTCAAGACCTGCTGAACAACCTTCTTGTCTAGTGAATTCAGATAAGCAGATTATTCAAAGGCTTCCATCGTTGATTCGGCTTTGTTCAACCACAGCTCTTGAAGAAGCTAAGAAATTAAGCTTGGAAAATCCCTCTTTCATGATcactataaagaaaaatcatctaTTATTTTCCGGACTGGGTGTACCAGTTGAGTTCCTCAGAAATCATGCAACAAAGAGGGAACAGAATGTGCTGATACAACAAGGAAATCAATCATGGCCTGCAAAGTTGCTCTATTATCCTCAAAAGCATTGGGGCATACTAGCTGCAACTGGTTGGCGATCATTTGCAAGAGAAAGTAAGCTGCGCGTTGGAGATGTCTGTGTGTTTGAGCTGATAAACAGAGATGATCCAGTGCTAGAAGTTTATGTTTATAGACGCCATAGTTA 2192 0.3755 MASHRHQQKAVHFFKVILKCMLRDGVLRIPSDFTRKYGGDLKNPVFLKPPDGTEWKIYWEKHDDGDIWFEKGWKEFATHYSLDHWYFIIFKYEGTCNLEVIIFNMAAIEIEYPSHVTDEENYNLGKDSDDSVEFLGEGPTYPNTRLRSSLSNPQPLKRLRNGKVRVAQRSSDLKKLGEGPSFQKARPRSPLPHAQTLKKLRSGKTIVAERSSNLKKCPLPPIRPCKKMRSCTNGEDGSTSSLQKKPINGELIQVEGSSNYSTKKCSNSLAITIRRRKPLTEVEKARALQRVITFSSKYPHFKRVMQPSYISRPYLRVPPKFWKQHLKKKQGAVLLQALDGRTWSSRYRVGSFADKLYIPGWTAFAKDNVLEVGDVCVFEFIQRTIATIRVTISRHEQLSCLVNSVERVKGNARKKSPLLPLHPCKKMRACKNDEVESTSNLQKKPIHGELIQPEAIARSKPLTEVEKARALQRVSAFSSEYPHFKRVMQPSYVSKHHLVIPLQFWKQHLKKRRDILLQALDGRTWHARHKVGFSNKAFLSGWGAFAKDNYVEVGDVCVFELIQRTKATLRVTISRPAEQPSCLVNSDKQIIQRLPSLIRLCSTTALEEAKKLSLENPSFMITIKKNHLLFSGLGVPVEFLRNHATKREQNVLIQQGNQSWPAKLLYYPQKHWGILAATGWRSFARESKLRVGDVCVFELINRDDPVLEVYVYRRHS 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01302 716 CDD B3_DNA 482 575 IPR003340 GO:0003677
Bva01g01302 716 SMART B3_2 301 396 IPR003340 GO:0003677
Bva01g01302 716 SMART B3_2 13 106 IPR003340 GO:0003677
Bva01g01302 716 SMART B3_2 484 577 IPR003340 GO:0003677
Bva01g01302 716 SMART B3_2 619 715 IPR003340 GO:0003677
Bva01g01302 716 PANTHER B3 DOMAIN-CONTAINING 3 394 - -
Bva01g01302 716 PANTHER B3 DOMAIN-CONTAINING 409 575 - -
Bva01g01302 716 PANTHER B3 DOMAIN-CONTAINING 602 714 - -
Bva01g01302 716 SUPERFAMILY DNA-binding pseudobarrel domain 294 394 IPR015300 -
Bva01g01302 716 SUPERFAMILY DNA-binding pseudobarrel domain 613 714 IPR015300 -
Bva01g01302 716 MobiDBLite consensus disorder prediction 134 194 - -
Bva01g01302 716 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 3 394 - -
Bva01g01302 716 CDD B3_DNA 617 713 IPR003340 GO:0003677
Bva01g01302 716 ProSiteProfiles B3 DNA-binding domain profile. 300 396 IPR003340 GO:0003677
Bva01g01302 716 ProSiteProfiles B3 DNA-binding domain profile. 483 577 IPR003340 GO:0003677
Bva01g01302 716 Gene3D - 601 715 IPR015300 -
Bva01g01302 716 Gene3D - 279 398 IPR015300 -
Bva01g01302 716 Gene3D - 462 578 IPR015300 -
Bva01g01302 716 SUPERFAMILY DNA-binding pseudobarrel domain 477 575 IPR015300 -
Bva01g01302 716 ProSiteProfiles B3 DNA-binding domain profile. 618 715 IPR003340 GO:0003677
Bva01g01302 716 CDD B3_DNA 299 394 IPR003340 GO:0003677
Bva01g01302 716 ProSiteProfiles B3 DNA-binding domain profile. 12 106 IPR003340 GO:0003677
Bva01g01302 716 SUPERFAMILY DNA-binding pseudobarrel domain 7 104 IPR015300 -
Bva01g01302 716 MobiDBLite consensus disorder prediction 142 156 - -
Bva01g01302 716 Pfam B3 DNA binding domain 621 714 IPR003340 GO:0003677
Bva01g01302 716 Pfam B3 DNA binding domain 484 575 IPR003340 GO:0003677
Bva01g01302 716 Pfam B3 DNA binding domain 20 102 IPR003340 GO:0003677
Bva01g01302 716 Pfam B3 DNA binding domain 301 395 IPR003340 GO:0003677
Bva01g01302 716 CDD B3_DNA 12 104 IPR003340 GO:0003677
Bva01g01302 716 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 409 575 - -
Bva01g01302 716 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 602 714 - -
Bva01g01302 716 Gene3D - 4 107 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01302 Bva-Chr1 14123884 14128134 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01302 605 713 B3 DNA Binding Superfamily AT3G18990 30.631 2.65e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bva01g01302 B3 2.9e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g01302 - - pavi:110753026 322.398