Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01300 ATGGCTTCCCATCGTCATCAACAGAAAGCTGTCCATTTCTTTAAGGTTATTCTGAAATGTATGCTTAGAGATGGAGTTCTTAGGATTCCAAGCgattttacaagaaaatatggaGGTGATCTGCAAAATCCAGTGTTTCTTAAGCCTCCGGATGGCACTGAATGGAAAATATATTGGGAAAAACATGATGATGGTGACATTTGGTTCGAGAAGGGTTGGAAAGAGTTTGCATCACATTATTCTCTTGATCATTggtatttcattatatttaaatatgaaggaACTTCTAATTTGGAAGTAATCATATTTAACATGGCCGCCATAGAAATAGAGTATCCTTCCCATGTCACTgatgaagaaaattacaatCTTGAAAAGGACAGTGATGATTCAGTTGAATTTTTGGGTGAGGGACCTACATATCCAAATACTAGACTAAGATCATCATTGTCAAATCCCCAAccccttaaaaaattaagaaatggcAAGGTTAGAGTTGCCCAAAGAAGCTCTGATCTGAAAAAGTTGGGAGAGGGACCTGCATTTCAAAAAGTTAGACCAAGATCACCATTACCACACGCCCAAACCCTTAAGAAATTGAGAAGTAGCAAGACTATTGTTGCTGAAAGAAGCTCTAATCTGAAGAAATGCCCATTACCGCCTATTCATCCTTGTAAGAAAATGAGAGCTTGTACAAATGGAGAAGATGGAAGAACCTCCAGCTTGCAAAAGAAGCCAATCAATGGAGAACTAATTCAAGTGGAAGGTAGAAGCAATTATTCCACTAAGAAGTGCTCAAATTCCCTGGCTATTACTATTAGAAGGAGAAAACCATTAATAGAAGTTGAAAAAGCTAGAGCATTGCAGAGAGTCAGTACTTTCAGTTCTAAATATCCTCATTTCAAGCGTGTCATGCAGCCATCTTATGTTTCAAGACCTTACTTGAGAGTTCCACCGAAATTTTGCAAACAACacttgaagaagaagcaaggAGCTGTCCTGCTTCAAGCCTTGGATGGGAGAACTTGGTCTAGTAGGTACAAAGTTATTTCCTTTGCCGATAAATTGTACATACCTGGCTGGACAGCATTTGCAAAAGACAATGTTTTGGAAGTGGGTGATGTTTGTGTGTTTGAGTTCATCCAGAGAACCATAGCTACAATTCGAGTAACAATTTCAAGACATGAACAACTTTCTTGTCTTGTGAATTTAGCTGAAAGGGTTAAAGGTaatgcaagaaagaaatcacCGTTACTGCCTCTTCATCCTTGTAAGAAAATGAGAGCATGTACAAATGGAGAAGTTGAAAGCACCTCCAATCTGCGAAAGAAGCCAATCCATAGAGAACTAATTCAACTGGAAGGGAGAAGCAAATTTTCTACTAAGAAATGCTCAAATTCCCTAGCTATTGCAAGGGGCAAACCATTAACTGAACTTGAAAAAGCTAGAGCATTGCGGAGAGTCAATGCTTTCAGTTCTGAATATCCTCATTTCAAGCGTGTCATGCAGCCATCATATGTTTCTAAACATCACTTGGTAATTCCATTACAATTTTGCAAACAACACTTGAAGAAGCGAAGAGATATTCTCCTCCAAGCCTTGGATGGGAGAACTTGGCATGCTAGGTACAAAGTTGGTTTTAGCAATAAAGCTTTCTTATCTGGCTGGGGAGCATTTGCAAAAGACAATTATGTGGAAGTGGGAAATGTTTGCGCTTTTGAGCTCATCCAGAGAAACAGTAAATCCACTTCTCCTGGAGAGATATctagaaaagggaaagaaaagaaagctgaGTCTTCGGATGTTGAACTTATCGGAGAAGAAGCTGGTTCTCCTGTTCACAGAGTATTTCGACGACAAGCCCGCAGCTCTAGTCGACTGAAAGCCCCTGTTCAACCAGACAATTCCGCAAAAATGAAGATGCTCGCAAAGCGGAAGATTGCTTACGGAATGGTTGTTGATTTTAGCAAGGACGACGATATGAAGAAGATCAAGAAGCGGTTCACCGGGATGGGCTGGAAGAATTTCTTCCAAGTGACTGAAAGTGTTATCTACGACGCCTTGGTCCGCCAATTTTATGGTAATCTTACTGACTCTGTTCTTGGAAATTCTGTTGCTATTACGACTATAGTTGATGAGCATGAGTTTACTTTAAGTGAGGAAATATTGGGAAATATCTTGGGTGTACCTGCTGAAGGGAAACGGATATACTGTTCCAAGCGTTGGGACCAGAAAAAGACAGGTGTCTCTTTCGCTCAAGCTATGGAGATAATAGCTGATTCTCCCATTGACCCTCTGTGGTCCTTGAAACCAAGTTTGCAGTTTGCCAACCAGATAACGAAGACAATGGGAAGGATCGTTAAGATGGCTATTATGCCAAAGTTAGGGAATTTGTCAGGCTATAACTACAATGAGATGAACGTTCTCTTTCACTTGAAGATGAAGCTCCCTTTAAACCTGCCATTCCTCATACTCAACCATATGATCGAATCAGCAAAAGACACAAGGAGCCAATTTGTTCTGCCGTATGGAATGATCTTAACCCGTATCTTCAAGCATCAACCCGCCATTGATACCACTGCATACTCTTACTCTCCAATGCCCAGAAATAATGTGATTCGAAAGCCACTcattttgaagaaaaggaaCTTAAAGAGAAAAGCTGAACATAGCCCTCAAGGCCGAGACTCGAAGCAAAGGGTTTCAACCTCTTTTGGTGTAAGTCTTTGGCGAGAGTCACAGCCATCCTTTTCTGAACACAACCGTTGGTTAGAATATATGTTGAGATGTGCTCTATCACGGATTGATAACCTTCAAGAAGAAGTGAAACTTATGAAGAAAGAGTTGGGTGAACTCAAGGCGAAGCAGTACATGGAGAGAACAGAAACAGGGGCCAGTGACGACGAGGATGACGCTGATGTAGATGATGATGAGGAAGAGGAAGCTGATGATTCCGAGGATGTCTA 2966 0.3887 MASHRHQQKAVHFFKVILKCMLRDGVLRIPSDFTRKYGGDLQNPVFLKPPDGTEWKIYWEKHDDGDIWFEKGWKEFASHYSLDHWYFIIFKYEGTSNLEVIIFNMAAIEIEYPSHVTDEENYNLEKDSDDSVEFLGEGPTYPNTRLRSSLSNPQPLKKLRNGKVRVAQRSSDLKKLGEGPAFQKVRPRSPLPHAQTLKKLRSSKTIVAERSSNLKKCPLPPIHPCKKMRACTNGEDGRTSSLQKKPINGELIQVEGRSNYSTKKCSNSLAITIRRRKPLIEVEKARALQRVSTFSSKYPHFKRVMQPSYVSRPYLRVPPKFCKQHLKKKQGAVLLQALDGRTWSSRYKVISFADKLYIPGWTAFAKDNVLEVGDVCVFEFIQRTIATIRVTISRHEQLSCLVNLAERVKGNARKKSPLLPLHPCKKMRACTNGEVESTSNLRKKPIHRELIQLEGRSKFSTKKCSNSLAIARGKPLTELEKARALRRVNAFSSEYPHFKRVMQPSYVSKHHLVIPLQFCKQHLKKRRDILLQALDGRTWHARYKVGFSNKAFLSGWGAFAKDNYVEVGNVCAFELIQRNSKSTSPGEISRKGKEKKAESSDVELIGEEAGSPVHRVFRRQARSSSRLKAPVQPDNSAKMKMLAKRKIAYGMVVDFSKDDDMKKIKKRFTGMGWKNFFQVTESVIYDALVRQFYGNLTDSVLGNSVAITTIVDEHEFTLSEEILGNILGVPAEGKRIYCSKRWDQKKTGVSFAQAMEIIADSPIDPLWSLKPSLQFANQITKTMGRIVKMAIMPKLGNLSGYNYNEMNVLFHLKMKLPLNLPFLILNHMIESAKDTRSQFVLPYGMILTRIFKHQPAIDTTAYSYSPMPRNNVIRKPLILKKRNLKRKAEHSPQGRDSKQRVSTSFGVSLWRESQPSFSEHNRWLEYMLRCALSRIDNLQEEVKLMKKELGELKAKQYMERTETGASDDEDDADVDDDEEEEADDSEDV 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01300 988 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 409 580 - -
Bva01g01300 988 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 3 394 - -
Bva01g01300 988 SMART B3_2 13 106 IPR003340 GO:0003677
Bva01g01300 988 SMART B3_2 498 584 IPR003340 GO:0003677
Bva01g01300 988 SMART B3_2 301 396 IPR003340 GO:0003677
Bva01g01300 988 PANTHER B3 DOMAIN-CONTAINING 409 580 - -
Bva01g01300 988 PANTHER B3 DOMAIN-CONTAINING 3 394 - -
Bva01g01300 988 SUPERFAMILY DNA-binding pseudobarrel domain 493 578 IPR015300 -
Bva01g01300 988 ProSiteProfiles B3 DNA-binding domain profile. 300 396 IPR003340 GO:0003677
Bva01g01300 988 ProSiteProfiles B3 DNA-binding domain profile. 12 106 IPR003340 GO:0003677
Bva01g01300 988 CDD B3_DNA 496 581 IPR003340 GO:0003677
Bva01g01300 988 SUPERFAMILY DNA-binding pseudobarrel domain 294 394 IPR015300 -
Bva01g01300 988 MobiDBLite consensus disorder prediction 953 988 - -
Bva01g01300 988 Gene3D - 4 107 IPR015300 -
Bva01g01300 988 ProSiteProfiles B3 DNA-binding domain profile. 497 592 IPR003340 GO:0003677
Bva01g01300 988 MobiDBLite consensus disorder prediction 964 988 - -
Bva01g01300 988 Pfam B3 DNA binding domain 301 395 IPR003340 GO:0003677
Bva01g01300 988 Pfam B3 DNA binding domain 20 102 IPR003340 GO:0003677
Bva01g01300 988 Pfam B3 DNA binding domain 498 580 IPR003340 GO:0003677
Bva01g01300 988 CDD B3_DNA 299 394 IPR003340 GO:0003677
Bva01g01300 988 Gene3D - 279 398 IPR015300 -
Bva01g01300 988 Gene3D - 476 584 IPR015300 -
Bva01g01300 988 CDD B3_DNA 12 104 IPR003340 GO:0003677
Bva01g01300 988 Coils Coil 928 955 - -
Bva01g01300 988 SUPERFAMILY DNA-binding pseudobarrel domain 7 104 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01300 Bva-Chr1 14074952 14079552 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01300 408 577 B3 DNA Binding Superfamily AT3G18990 27.168 4.88e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bva01g01300 B3 2.3e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g01300 - - jre:108995281 274.633