Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01298 ATGTATGTTTACAAATTAAAGCAAACTGTGCCATTGGAATTTGCGaagaaatatttcaatattgaaaaaaatactattggaAAGAATGCTATGCTTGTCAAGCTTCAAAGAATTGATGGTAAATCATGGTCTGTCAAATGCAAGTCTAGATTATCCGACCGAAAACCCAGGCTTGAATTTCATCATGGATGGAAGCAATTTGCGGTGGACAATGATTTGCGAATAGGTGATGTTTGTGTCTTTGAGCTCATTCATAGAATCGAGCTTATATTTGATGTGACAATTTTTCGAGACACAAACGGTGGAACTCAATCAATATATTCAgCTCAAGGGAGTAAAGTTGATCTCCAAGAATCCAATAGAAAGCAGGATATTCAGAGAAAAAATGTTTGTGCTAGTAAAGTTAAATCAGCGAACCCAAAGTCGTGTGACCAATTCAGAtctcaatttaaatttgGTGGAATCTGTAATCAAAGAGCAAAACCAGCTCTTGAAAAAGCCGAAAATTTTGAGTCAAACAATCCCTTCTTCAGAGTCTGTATTAGGCCTTGTCATGTGCATCGTAGCCAACCACTTGTACCAACAACCTTCTACTTGTGGTGTACtacagaaagagagaagaatataTTGATACAGGTGGGTGAAATATCATGGCATGCAAAGTTGATCTATTATCCTCATTTATCATCTGCCTATTTCTCTGCTGGTTGGCCTGCATTTGCTAGGGAAAATGACTTGCGAGGTGGAGATGTTTGCATCTTTGAGCTGATTAACAGAGAAGTGTTGAAAGCACATATTTTCCGTTCCACAGTTAGATTGTGTGCAGCATGGAGCTTTTGCATTTTCAGAATATTGCATCTTTGGATGTA 869 0.3567 MYVYKLKQTVPLEFAKKYFNIEKNTIGKNAMLVKLQRIDGKSWSVKCKSRLSDRKPRLEFHHGWKQFAVDNDLRIGDVCVFELIHRIELIFDVTIFRDTNGGTQSIYSAQGSKVDLQESNRKQDIQRKNVCASKVKSANPKSCDQFRSQFKFGGICNQRAKPALEKAENFESNNPFFRVCIRPCHVHRSQPLVPTTFYLWCTTEREKNILIQVGEISWHAKLIYYPHLSSAYFSAGWPAFARENDLRGGDVCIFELINREVLKAHIFRSTVRLCAAWSFCIFRILHLWM 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01298 289 CDD B3_DNA 9 97 IPR003340 GO:0003677
Bva01g01298 289 ProSiteProfiles B3 DNA-binding domain profile. 176 270 IPR003340 GO:0003677
Bva01g01298 289 PANTHER B3 DOMAIN-CONTAINING 6 98 - -
Bva01g01298 289 PANTHER B3 DOMAIN-CONTAINING 120 269 - -
Bva01g01298 289 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 120 269 - -
Bva01g01298 289 Gene3D - 1 100 IPR015300 -
Bva01g01298 289 Gene3D - 155 270 IPR015300 -
Bva01g01298 289 ProSiteProfiles B3 DNA-binding domain profile. 1 99 IPR003340 GO:0003677
Bva01g01298 289 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 6 98 - -
Bva01g01298 289 SUPERFAMILY DNA-binding pseudobarrel domain 170 269 IPR015300 -
Bva01g01298 289 SMART B3_2 176 270 IPR003340 GO:0003677
Bva01g01298 289 SMART B3_2 2 99 IPR003340 GO:0003677
Bva01g01298 289 CDD B3_DNA 175 268 IPR003340 GO:0003677
Bva01g01298 289 Pfam B3 DNA binding domain 212 269 IPR003340 GO:0003677
Bva01g01298 289 Pfam B3 DNA binding domain 7 97 IPR003340 GO:0003677
Bva01g01298 289 SUPERFAMILY DNA-binding pseudobarrel domain 9 94 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01298 Bva-Chr1 14050034 14051830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01298 10 97 B3 DNA Binding Superfamily AT3G18990 34.091 1.72e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bva01g01298 B3 1e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g01298 - - hbr:110649033 153.68