Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01283 ATGGCTGCATCTTCATCCTCACCATCGTTGTTTGGAATCAGAGAAGAAGATCAAAACCCGATGAAGCAGCAGCATTCATCGGCACCGTCGTCCTCCTCGGCTCCGGCAGCTGCACCACcccagaagaaaaagagaaaccaACCTGGAACACCAAATCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAACAAAGGGTTCCAAAGAGAGCAAAACCTACAGCTCCACAGAAGAGGACACAACCTGCCTTGGAAGCTAAAGCAGAAGACTACAAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGCGTGCACCATGACCCTTCAAGAGCTCTAGGTGACCTCACTGGGATCAAGAAGCACTTTTCGCGAAAGCACGGCGAGAAGAAGTGGAAGTGCGAAAAGTGCTCAAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCGAAGACTTGTGGAACCAGAGAATATAGATGTGATTGTGGCACTCTCTTCTCCAGGCGAGATAGTTTCATCACCCATAGAGCTTTTTGTGATGCATTGGCTCAAGAGAGTGCAAGACAACCACCAAGTCTGGGCAGCACCATAGCTAACCACCTCTATGGTGGCACCAACATGGGCTTAGGTTTATCCAATGTGGGTGCTCAGATCACTTCCCTTCATGATCAGAACAACCACTCTAGTGACCTTCTCCGCCTCGGCGGAGGTGGCAGTGGCGGCGGTGGTCGCACCGGACAATTCAATCACATTCTCCCACCTTCATTGGGCTCCTCCTCATCCTTCAGACCTCCACAACAAACCATGCCTTCAGCTGCAGCATTCTTCATGCAAGAGCCAAACCAAACATACCATGACCAACACCAACGTGGGACAGCAACAACGTTGGTGCAAAACAAACCATTTCATGGTTTAATGCAGTTTTCTGACCTTCAAAACACAGCCGCCGCTGGCGCCGCCACCAACAACAACAACTCCCCAACTGGCGGCGCCGCCAACAACACCAACCTCTTCAACCTTCCTTTCCTCTACAACTCTAACCCCGGCGGAGGCGGCAACCCCACCTCTTTCTCTGAACACTTCACCAATGGAAGTGGCTCCGGCACCGGCACCGGCGACAATGAAGGGTCCAACTTCTTCTCTGGCTCCATAATGGGAAACCAAACAAGCTCCGCCGCTCCTTCACTCTTCAGCACATCTCTCCAAAACAACACTGCTGTTGTCCCTGTCATGTCCGCCACCGCGCTGCTTCAGAAAGCTGCTCAAATCGGTGCAAGCTCCAGCAACAACAGCGGCACAGTTTCATTGCTCAGAAGCTTCGGCAGCTCCTCCTCTAGCAGCGGTGGGGGCGGAGGAGGCTCAAACTCCAAACCAGAACACAAATCACCACCACTCCTTAATGCTTCTTCAAACTACACAACCATGTTCACCACTGCAACTGATCAAAACAACAACCTCAATGACCTGATGAACTCCTTCGCAAGTGGCGGCTTCGAAAGTGGCTCTGTAGGGTTAAGTGGCTTTGAAGCCTCTGAAAGGCTCAGCACCAGAGATTTTCTCGGCGTTGGACAAATAATGAGGAGCATGAGTGGAAATATGTCGCAGAGagaacagcagcagcagcagcaacaaggATTTAGCTTGAGCTCAttggagaaagagagaaatgcTGCTGCGCCATCGGCACAATCTTTTGGAGGTGGTGGAGGGAATTTTCAGTG 1769 0.489 MAASSSSPSLFGIREEDQNPMKQQHSSAPSSSSAPAAAPPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPPSLGSTIANHLYGGTNMGLGLSNVGAQITSLHDQNNHSSDLLRLGGGGSGGGGRTGQFNHILPPSLGSSSSFRPPQQTMPSAAAFFMQEPNQTYHDQHQRGTATTLVQNKPFHGLMQFSDLQNTAAAGAATNNNNSPTGGAANNTNLFNLPFLYNSNPGGGGNPTSFSEHFTNGSGSGTGTGDNEGSNFFSGSIMGNQTSSAAPSLFSTSLQNNTAVVPVMSATALLQKAAQIGASSSNNSGTVSLLRSFGSSSSSSGGGGGGSNSKPEHKSPPLLNASSNYTTMFTTATDQNNNLNDLMNSFASGGFESGSVGLSGFEASERLSTRDFLGVGQIMRSMSGNMSQREQQQQQQQGFSLSSLEKERNAAAPSAQSFGGGGGNFQ 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01283 589 MobiDBLite consensus disorder prediction 22 37 - -
Bva01g01283 589 MobiDBLite consensus disorder prediction 546 589 - -
Bva01g01283 589 MobiDBLite consensus disorder prediction 245 283 - -
Bva01g01283 589 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 517 - -
Bva01g01283 589 MobiDBLite consensus disorder prediction 440 485 - -
Bva01g01283 589 Gene3D Classic Zinc Finger 125 204 - -
Bva01g01283 589 SMART c2h2final6 147 167 IPR013087 -
Bva01g01283 589 SMART c2h2final6 71 93 IPR013087 -
Bva01g01283 589 SMART c2h2final6 112 142 IPR013087 -
Bva01g01283 589 MobiDBLite consensus disorder prediction 1 56 - -
Bva01g01283 589 MobiDBLite consensus disorder prediction 267 283 - -
Bva01g01283 589 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Bva01g01283 589 MobiDBLite consensus disorder prediction 365 399 - -
Bva01g01283 589 MobiDBLite consensus disorder prediction 546 573 - -
Bva01g01283 589 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Bva01g01283 589 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Bva01g01283 589 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Bva01g01283 589 MobiDBLite consensus disorder prediction 440 469 - -
Bva01g01283 589 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 517 - -
Bva01g01283 589 Gene3D Classic Zinc Finger 50 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01283 Bva-Chr1 13773176 13779921 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01283 10 547 IDZ Gene Family AT2G02070 46.612 1.98e-133 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva01g01283 zf-C2H2_jaz 3.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g01283 K25870 - qsu:112030349 639.417