Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01279 atgGATTTTCCAAGAGACAAGAAGGCAGGGAAGACCAACTATATACTTCAGATTTGCTTGTGTTCACTGAAAAATATGGCGGCTGCTTCCTCGTCGACCGTGCCGTTCTTCGGAATCagagaagaaaaccaaagTCATCAGATGCCAAACCACCAATCCTCCACAACTGCTTCTTCAACTGCTCCAAACGCGGCACCTCAAAAAAAGAGGAGAAATCAACCTGGAACGCCAAATCCAGATGCAGAGGTTATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTCATATGTGAGGTATGCAACAAAGGATTCCAAAGGGAGCAAAACCTACAGCTCCACAGAAGAGGACACAACCTGCCTTGGAAGCTAAAGCAAAAGACTAACAAAGagccaaagaaaaaggtataTCTGTGTCCTGAGCCCACATGTGTGCACCATGACCCTTCAAGAGCTCTTGGTGACCTCACTGGGATTAAGAAGCACTATTCTCGCAAACATGGTGAGAAGAAATGGAAGTGTGAGAAATGCTCCAAAAGATATGCTGTTCAATCTGACTGGAAAGCACATTCCAAAACCTGTGGCACTAGAGAGTATAGATGTGACTGTGGTACTCTCTTCTCAagGAGGGACAGTTTTATCACTCATAGAGCTTTTTGTGATGCACTAGCACAAGAGAGTGCAAGACACCCCACCAACTTGAACACCATGGGCACTCATCTATACAGCTCCAACCACATGTCCTTAGGGTTATCCCAAATCCCCCAACTGCAAAATCAAAACCAGGCAACTTCTAACAACATTTTGCGCCTCGGCGGCGGCGGGCCAGCCAAATTTGAGCATTTAAATGTAATCTCACCTTCAAATGTATCTTCATTTGGAACAATTCCCTCTTCAGCTTTCTTCTTAAATGACCCAACTCAAGGATTTCAAGAGCAACAATCTCCACAAGGGCAATTCTCAAGCAAGCAGCTACAAGGCCTTATGCAACTTCCTGATCTCCAAGGCAACTCGAATAACTCCAATGCCAATCTATTTAATCTTAGCTTCTTCCCTAATGGCAATAACACTGCAAACAGCATAATCAATGACCAATACAGCAATGcaagtggtggtggtggtggtaaCCAAGGGACAACACTATTCTCTAATAGCCATGTGAGTGATCAAGTTGGGACAGGTTTGTCCTCACTCTTCAGCAACCAAGTGCAACATGAAAGCATGTCCCCTCATATGTCTGCAACTGCATTGCTTCAGAAAGCTGCTCAAATGGGTTCAACCACGAGCGCGAATGGCACTAGTTTACTACGAGGAATTGGTTCTTCTTCAACCAATAGTGCCAAATCTGATAGGCAAGTTTTGCCTAATAATCTTGCAGCGTTTGGAGGTGAAAGAAGGGCAGAAAGTGTAAGATCAAGCATGGAAAGGGAGCAGCACCATCTTCAAGGGCTAATGAACTCTCTTGCCAATGGTAACAATTCCATTTATGGAAATGTTCATCACAATATGGATGAGTCTTCTAAGTTGCACCAAAATCTTGGTGTAACCTTTGGAGGGTCTGATAAATTAACGTTGGATTTTCTTGGTGTCGGAGGAATGGTAAGAAACATGAATGGTGGATTTTCCCAAAGagatcaacaacaacaacaacatgGCATCAACATGAGTTCTTTGGATTCTGAACCCAAGTCAACATCACAAGTAAGCCAACCTTTTGGAAGCACAACGTTGTA 1736 0.4182 MDFPRDKKAGKTNYILQICLCSLKNMAAASSSTVPFFGIREENQSHQMPNHQSSTTASSTAPNAAPQKKRRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKKKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPTNLNTMGTHLYSSNHMSLGLSQIPQLQNQNQATSNNILRLGGGGPAKFEHLNVISPSNVSSFGTIPSSAFFLNDPTQGFQEQQSPQGQFSSKQLQGLMQLPDLQGNSNNSNANLFNLSFFPNGNNTANSIINDQYSNASGGGGGNQGTTLFSNSHVSDQVGTGLSSLFSNQVQHESMSPHMSATALLQKAAQMGSTTSANGTSLLRGIGSSSTNSAKSDRQVLPNNLAAFGGERRAESVRSSMEREQHHLQGLMNSLANGNNSIYGNVHHNMDESSKLHQNLGVTFGGSDKLTLDFLGVGGMVRNMNGGFSQRDQQQQQHGINMSSLDSEPKSTSQVSQPFGSTTL 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01279 578 SUPERFAMILY beta-beta-alpha zinc fingers 96 193 IPR036236 -
Bva01g01279 578 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Bva01g01279 578 Gene3D Classic Zinc Finger 151 230 - -
Bva01g01279 578 MobiDBLite consensus disorder prediction 539 578 - -
Bva01g01279 578 MobiDBLite consensus disorder prediction 44 82 - -
Bva01g01279 578 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 26 547 - -
Bva01g01279 578 Pfam Zinc-finger double-stranded RNA-binding 97 119 IPR022755 -
Bva01g01279 578 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 547 - -
Bva01g01279 578 MobiDBLite consensus disorder prediction 540 578 - -
Bva01g01279 578 Gene3D Classic Zinc Finger 75 144 - -
Bva01g01279 578 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 119 IPR013087 -
Bva01g01279 578 MobiDBLite consensus disorder prediction 434 454 - -
Bva01g01279 578 SMART c2h2final6 97 119 IPR013087 -
Bva01g01279 578 SMART c2h2final6 173 193 IPR013087 -
Bva01g01279 578 SMART c2h2final6 138 168 IPR013087 -
Bva01g01279 578 MobiDBLite consensus disorder prediction 44 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01279 Bva-Chr1 13709992 13714425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01279 36 540 IDZ Gene Family AT2G02070 48.148 7.02e-132 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva01g01279 zf-C2H2_jaz 3.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g01279 K25870 - tcc:18609936 716.457