Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01278 ATGAAGCGCGACTACCTCGAACTCTCCGATGAAGAATGGGAGAATCACACCTTCGATTCTTCTCGAGTTCTCAAACGGACTCAGGTTGATACTGCTACTGCTCCGCCGCCGATTGAATCCTTTGCTTATGGGTCTCGGAAGGCAGAGATTTCTGACCAGAGCAGCGACGATTGCGTCGAAATCAGGGAAAACTTGGAGGAAGGATTGGAAGATGAAGATTTGGAGCTTGATAGAGGTAAGTCTGTGGCCACGGCAAATCCTGGCCGTAGATTTATTGtcgatgatgatgatgaggaggaagaagagggGGAGGAGGTAGTAGTAGTGAGCGATAGGGATATTCGGGCAGTGTATGAAATAGAATCttcagaggaagaagaagaagaagaagaggtgGAGAATGAAAACGATGTCGTTGGAAGGGCTTTGCAGAAGTGTGCCAAAATATCTGCGGAATTGAGAAAAGAGCTATATGGGTCTTCGGGAACTGCTTGTCACCGGTATTCTGAAGTGGAATCATCAACAGTGAGAATTGTAACCCAGGATGATGTTGATGTTGCATGTGGATCTGAGGATTCAGATTTTCAGCCTAACCTCAAGCCATATCAGCTGGTTGGTGTTAATTTTCTGCTTCTGCTGTATCAGAAGGGTATTGGAGGagCTATATTGGCAGACGAAATGGGTCTTGGCAAAACAGTTCAGGCTATCACTTATTTAACTTTGCTGAAACACCTGAACAATGATCCTGGTCCACATCTTGTAGTATGTCCTGCGTCTGTTCTGGAAAACTGGGAAAGGGAACTAAAAAGGTGGTGCCCATCCTTTTCTGTTCTCCAATACCATGGAGCTGGACGAGCAGCGTATGCCAAGGAATTGAATTCTCTATCAAAGTCGGGATTGCCCCCTCCATTTAATGTTCTTCTTGTTTGTTATTCACTTTTTGAGCGGCACAGTCCGCAGCAGAAAGATGATCGTAAAATTCTAAAACGTTGGAGATGGAGTTGTGTGCTGATGGATGAAGCACATGCTTTGAAGGATAAAAATAGCTATAGGTGGAAGAATCTGATGTCTGTTGCAAGAAATGCCAACCAGCGATTGATGCTTACAGGGACACCTCTTCAAAATGATCTACATGAGTTATGGTCAATGTTGGAGTTTATGATGCCTGATCTTTTTGGTACTGAAGATGTTGACTTGAAAAAGTTACTGAATGCAGAAGATAGAGATTTAGTTAATCGTATGAAATCCATTCTGGGGCCATTTATTTTGCGGCGGCTAAAATCTGATGTGATGCGGCAACTTGTTCCTAAAATACAGCGGGTTGAATATGTTGTAATGGAAAAGCAACAGGAATATGCCTACAAGGAAGCCATTGAAGAGTATCGTGCAATATCACAAGCCAGGATTGCAAAATGTTCTGAGCTTAACTCAAATAATGTTATTCAAGCGCTTCCTCGTCGACAAATAAACAACTACTTTGTTCAATTCCGCAAGATTGCAAACCATCCCTTGTTGGTGAGGCGTATCTACAGTGATGAGGATGTGGTTCGCTTTGCCAAGAAGTTACATCCAATGGGTGCTTTTGGCTTTGAATGTACTCTGGATAGAGTTATTGAAGaacttaaaagttataatGACTTCTCTATTCATCGGCTTTTGCTTAATTATGGTGTGACTGATAAAAAGGGAGTCCTTTCGAATAAACATGTTATGCTTTCTGCAAAATGTCGGGCCTTGGCAGAACTTCTTCCTTCATTAAAGCACCGTGGTCATCGTGTCTTAATCTTTAGTCAGTGGACATCAATGCTTGATATATTGGAGTGGACATTGGATGTCATTGGGTTGACCTATAGACGGCTTGATGGAAGTACACAGGTAACTGAGAGGCAGACGATAGTTGACACATTCAACAACGATACTTCAATATTTGCTTGCTTGCTTTCCACGAGAGCCGGAGGACAGGGCTTGAACTTGACAGGAGCTGACACTGTTGTCATTCATGACATGGATTTCAATCCCCAGATCGATAGACAGGCCGAAGATCGGTGCCATCGAATAGGTCAAACCAAGCCGGTAACCATATACCGGCTGGTGACCAAGGGAACAGTTGACGAAAATGTGTATGAGATTGCAAAAAGAAAGCTAGTGCTGGATGCTGCAGTCCTTGAGAATGGCATGGAAATGGATAAAGGTGATGTGCCTGAGAAGACCATGGGAGAGATATTGTCTGCAATTTTGTTGGGTTA 2246 0.419 MKRDYLELSDEEWENHTFDSSRVLKRTQVDTATAPPPIESFAYGSRKAEISDQSSDDCVEIRENLEEGLEDEDLELDRGKSVATANPGRRFIVDDDDEEEEEGEEVVVVSDRDIRAVYEIESSEEEEEEEEVENENDVVGRALQKCAKISAELRKELYGSSGTACHRYSEVESSTVRIVTQDDVDVACGSEDSDFQPNLKPYQLVGVNFLLLLYQKGIGGAILADEMGLGKTVQAITYLTLLKHLNNDPGPHLVVCPASVLENWERELKRWCPSFSVLQYHGAGRAAYAKELNSLSKSGLPPPFNVLLVCYSLFERHSPQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSMLEFMMPDLFGTEDVDLKKLLNAEDRDLVNRMKSILGPFILRRLKSDVMRQLVPKIQRVEYVVMEKQQEYAYKEAIEEYRAISQARIAKCSELNSNNVIQALPRRQINNYFVQFRKIANHPLLVRRIYSDEDVVRFAKKLHPMGAFGFECTLDRVIEELKSYNDFSIHRLLLNYGVTDKKGVLSNKHVMLSAKCRALAELLPSLKHRGHRVLIFSQWTSMLDILEWTLDVIGLTYRRLDGSTQVTERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLENGMEMDKGDVPEKTMGEILSAILLG 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01278 748 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 331 727 IPR027417 -
Bva01g01278 748 MobiDBLite consensus disorder prediction 27 57 - -
Bva01g01278 748 PANTHER SNF2/RAD54 HELICASE FAMILY 45 746 - -
Bva01g01278 748 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A CONTAINING DEAD/H BOX 1 45 746 - -
Bva01g01278 748 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 425 IPR027417 -
Bva01g01278 748 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 578 739 IPR001650 -
Bva01g01278 748 Coils Coil 115 135 - -
Bva01g01278 748 CDD DEXHc_Snf 199 392 - -
Bva01g01278 748 Gene3D - 168 423 IPR038718 -
Bva01g01278 748 SMART helicmild6 604 687 IPR001650 -
Bva01g01278 748 SMART ultradead3 195 400 IPR014001 -
Bva01g01278 748 CDD SF2_C_SNF 565 698 - -
Bva01g01278 748 Pfam SNF2-related domain 219 505 IPR000330 GO:0005524|GO:0140658
Bva01g01278 748 Pfam Helicase conserved C-terminal domain 575 687 IPR001650 -
Bva01g01278 748 Gene3D - 436 745 IPR027417 -
Bva01g01278 748 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 212 390 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01278 Bva-Chr1 13668530 13675652 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01278 220 714 RAD5 or RAD16-like Gene Family AT5G22750 27.258 1.89e-46 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bva01g01278 SNF2_N 3.3e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g01278 K14439 - gmx:100806323 1185.24