Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01192 ATGCTCTGTAATATCGCAACAATGCTTTGCTTTCTCTGCAAAACCATTCTTTCTCAGACTCAGAGGCATATCATTATAACCACCATTTCTCTAACTTCACTTCAACGCTTTTCTCTACAAAATTCATGGATTTCTCTGAAATACATGTCCACCACTTCAAATCTCCAGCCTTTTGCAGTCTCATATCTCATTAACACTCTTGGGTTCTCTCCTGAAAAAGCTGCTTCTGTTTCCAAGtacattaattttcaaactaGAGAAAAGCCTGATTTGATCATTGAGTTCTTCAAGAAACAAGGTTTCTCTCAAACCCAGATGTTAAGCCTCATAAAATCAAATCCACGTTTGCTTCTATGTGATCCTCAAAAAACCTTTCTGCCcaaaattgagtttttgaAGTCCAAAGGTGTCTTATGTTCTGACTTGCCTAAAATCATAGCATCCAGTCCTCGTTTTCTGACAAGTAACCTTCAGAAACATATCATCCCctcttttgatttctttatgaGCTTGCTTAAATCTGAAGACAAGTTCATTAAAGCTCTTAAACGTTTTTCTGCCATTCTTGTTCATAAGTCTAATGTTGTACGTAACATTGAAGTATTGATAGAGGTAGGGGTTCCTAAATGtaatattgttaaattattagaaaggCAGCCCCGGGGTTTGACTATGAAACATGAACGATTCCAGGAGACTGTAGCGGAAGTGAATGAAATGGGGTTTAATGCTTTGACGGGGCAATTTGTTATGGCTGTTGCTGTGATAACTTGTATAGGCAAATCCACATGGACAAGGAAGGCTGATCTCTATAAAGGGTGGGGTTGGTCAGATGATGAGATTTTAGCAGCATTTGGAAGGTTTCCAATCTTAATGGCACTTTCAGAGGATAAGATTGAGAAGACAATGGACTTTTTTGTCAATCAGATGGTCATTGAATCTTCTACTATTGCCAGATATCCAGCATTGCTGAGCTATAGCTTTCACAAGCGAATAGTTCCAAGGGCTTCTGTTTTCCAAGTTTTGTTGTCAAAAGGTCTTGTGAAACAGTTCGCCTTCcggaaaatattttacttgagTGAAGAAGTCTTCTTGGAGAAGTTTATCCTGTGTCATGGAAGTGAAGCCGATGAACTACTTAAGCCATATCAGGCAAAAATGAATGTTGAGCAGAAGAAATTCATGTTTGGGTGTTGTGGCTGTGTTCCTGGAGCGGCATTGTGGCGCTATCCTGGCACTCCACCAAATCTGCGagttttgGTAAATGTACTTGCTGACTTGGAGCTTTGGGGAATTGGTGTTGACCTTGAGAGATGTATCCAGGCTCATAAATGGTTGGTGAAGAGGCTAAAGATTCTCGAGAAGGAAGCTTCTAAGCTGGCTGGGATGACATTTTCATTGTATATGCCAGCAGATATTGCAAAGGTGCTGTATGAACACTTGAAGTTGCCCATATCTGATGGATGCACTAAGGGAAAGCAGCATCTAAGTACTGATAAACACAGTTTGGAAGCACTAAGGCATAAGCATCCCATTGTTCCAGTCATTAAAGAGCACCGAACATTAGCAAAGCTCTTGAATTGTACGCTGGATTCTGTTGGCTCCAAAGAAAGAGATCAGACCAAAAGGATGGTGTACGTCATTCTTTACGGTATGGGTGCCAAGAGCCTTGCAGAGCAACTGGATTGTACTTCAGATGAAGCTGTAGAAGAGATTAAGAACTTTAGAAGCTCTTTTCCTGGTGTTGCGTCCTGGCTTCAGGAAGCGGTTGCAACTTGTCGTAACAGAGGATATGTGGAGACACTTAAGGGAAGAAAACGATTtctgtcaaaaataaaatttggtagCGAATCGAGAGCTCAGAGGCAAGCTGTGAATTCCATCTGTCAGGAata 1895 0.3889 MLCNIATMLCFLCKTILSQTQRHIIITTISLTSLQRFSLQNSWISLKYMSTTSNLQPFAVSYLINTLGFSPEKAASVSKYINFQTREKPDLIIEFFKKQGFSQTQMLSLIKSNPRLLLCDPQKTFLPKIEFLKSKGVLCSDLPKIIASSPRFLTSNLQKHIIPSFDFFMSLLKSEDKFIKALKRFSAILVHKSNVVRNIEVLIEVGVPKCNIVKLLERQPRGLTMKHERFQETVAEVNEMGFNALTGQFVMAVAVITCIGKSTWTRKADLYKGWGWSDDEILAAFGRFPILMALSEDKIEKTMDFFVNQMVIESSTIARYPALLSYSFHKRIVPRASVFQVLLSKGLVKQFAFRKIFYLSEEVFLEKFILCHGSEADELLKPYQAKMNVEQKKFMFGCCGCVPGAALWRYPGTPPNLRVLVNVLADLELWGIGVDLERCIQAHKWLVKRLKILEKEASKLAGMTFSLYMPADIAKVLYEHLKLPISDGCTKGKQHLSTDKHSLEALRHKHPIVPVIKEHRTLAKLLNCTLDSVGSKERDQTKRMVYVILYGMGAKSLAEQLDCTSDEAVEEIKNFRSSFPGVASWLQEAVATCRNRGYVETLKGRKRFLSKIKFGSESRAQRQAVNSICQE 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01192 631 SUPERFAMILY DNA/RNA polymerases 420 630 IPR043502 -
Bva01g01192 631 SMART polaultra3 490 631 IPR001098 GO:0003677|GO:0003887|GO:0006260
Bva01g01192 631 PANTHER CGI-12 PROTEIN-RELATED 34 390 IPR003690 GO:0003690|GO:0006355
Bva01g01192 631 Gene3D - 494 631 - -
Bva01g01192 631 Pfam mTERF 258 364 IPR003690 GO:0003690|GO:0006355
Bva01g01192 631 Pfam mTERF 93 243 IPR003690 GO:0003690|GO:0006355
Bva01g01192 631 Gene3D Transcription termination factor 3, mitochondrial 195 381 IPR038538 -
Bva01g01192 631 Gene3D Transcription termination factor 3, mitochondrial 66 194 IPR038538 -
Bva01g01192 631 PRINTS DNA-polymerase family A (pol I) signature 575 586 IPR002298 GO:0003887|GO:0006261
Bva01g01192 631 PRINTS DNA-polymerase family A (pol I) signature 538 563 IPR002298 GO:0003887|GO:0006261
Bva01g01192 631 PRINTS DNA-polymerase family A (pol I) signature 597 608 IPR002298 GO:0003887|GO:0006261
Bva01g01192 631 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 34 390 - -
Bva01g01192 631 Pfam DNA polymerase family A 528 630 IPR001098 GO:0003677|GO:0003887|GO:0006260
Bva01g01192 631 Pfam DNA polymerase family A 439 531 IPR001098 GO:0003677|GO:0003887|GO:0006260
Bva01g01192 631 SMART mt_12 143 174 IPR003690 GO:0003690|GO:0006355
Bva01g01192 631 SMART mt_12 107 138 IPR003690 GO:0003690|GO:0006355
Bva01g01192 631 SMART mt_12 213 243 IPR003690 GO:0003690|GO:0006355
Bva01g01192 631 SMART mt_12 282 313 IPR003690 GO:0003690|GO:0006355
Bva01g01192 631 SMART mt_12 314 348 IPR003690 GO:0003690|GO:0006355
Bva01g01192 631 SMART mt_12 179 208 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01192 Bva-Chr1 11726763 11731390 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Bva01g01192 mTERF 7.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g01192 K15032 - qsu:112020620 347.436