Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01174 ATGGTCTTGAATCTTAGTAACATGGGGCTTAAAGGTTACATGGCCCCTGAATTGGGAAATTTGTCTTATCTTGCTGAACTTGACCTTAGCAATAACAACTTTCATGGTAAGATACCCAACGAGTTACGTGGATTGCATAGGCTTAAATTGTTGAACTTGAGCTACAATGGATTCAGTGGAGACATTCCACCATGGATAGGAGACTTGTCTGAACTTCAACACTTGGGTCTTCAAAGTAATAGTTTTGGCGGAAGCGTTCCAATTGAGGTTGGTCAACTTCATCAATTGAAGACTTTAAATATTGCGATTAACGAGCTTTCAGGAAGAATACCTGTAGAAGTCTTCAACATTTCTTCATTGGAAGTGTTGATCTTAGCTGGTAACTGGTTTTCAGGAGAGATTTCTAAAGCGATCGGTGATCTTCCCAAACTCAAAGTCGTAGACTTGCGATTGAATCAACTTTCTGGTATGATACCAAGAGAGATTGGGAACTTGACCAACCTTCGAGAGTTATATATTTCCCAAAATAGTATGGAAGGTGAAATTccaatttctcttttcaataTATCTTCTATCAGAGAAGTCCAACtcagaaataataatttacatgGTAGCCTTCCACAACAGTTATGTCATCATCTTCCTCAACTAGAATTTTTTTCGATACCACATAACaattttgaaggaaatatCCCAGGACAAATTGACAATTGTACACTACTGAAGAGATTATATTTAGATGGCAACTCCTTCATAGAGGAAGGACAATCCAAAACACATACCAATACTTTGGCTACACTTGGATACATTGCaccagAGTATGGATCCAAGGGAATCATTTCTACAAGAGGAGATGTCTATAGTTATGGGATTCTGATGTTGGAAAtgtttacaagaaaaaagCCCACAGATGATATGTTTACAACAGAATTGAACTTGAAAGGCTGGGTAACAAATTTGATGCCACATGCTACAGAAATTGTTGACTCCAATTTACTTCAAGAAGAGGGGCAGCAGATTGATGACATAATAACATATTCATCGACAATTTTGGAGTTGGCTTTGAATTGTTGTGCAGATTTGCCAGAAGCACGAATTAATATGATAGATGTGGTTGCTtcattaaacaaaatcaaaatggcgTTCATGCAGAAGACAAGAGCAAGGACAATGTG 1175 0.3523 MVLNLSNMGLKGYMAPELGNLSYLAELDLSNNNFHGKIPNELRGLHRLKLLNLSYNGFSGDIPPWIGDLSELQHLGLQSNSFGGSVPIEVGQLHQLKTLNIAINELSGRIPVEVFNISSLEVLILAGNWFSGEISKAIGDLPKLKVVDLRLNQLSGMIPREIGNLTNLRELYISQNSMEEEGQSKTHTNTLATLGYIAPEYGSKGIISTRGDVYSYGILMLEMFTRKKPTDDMFTTELNLKGWVTNLMPHATEIVDSNLLQEEGQQIDDIITYSSTILELALNCCADLPEARINMIDVVASLNKIKMAFMQKTRARTM 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01174 318 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 2 69 - -
Bva01g01174 318 Pfam Protein tyrosine and serine/threonine kinase 178 301 IPR001245 GO:0004672|GO:0006468
Bva01g01174 318 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 60 180 - -
Bva01g01174 318 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 181 311 - -
Bva01g01174 318 Gene3D Ribonuclease Inhibitor 1 114 IPR032675 -
Bva01g01174 318 SUPERFAMILY L domain-like 2 180 - -
Bva01g01174 318 SUPERFAMILY Protein kinase-like (PK-like) 184 308 IPR011009 -
Bva01g01174 318 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 60 180 - -
Bva01g01174 318 Gene3D Transferase(Phosphotransferase) domain 1 153 317 - -
Bva01g01174 318 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 181 311 - -
Bva01g01174 318 Pfam Leucine rich repeat 119 177 IPR001611 GO:0005515
Bva01g01174 318 Pfam Leucine Rich Repeat 24 45 IPR001611 GO:0005515
Bva01g01174 318 Pfam Leucine Rich Repeat 47 67 IPR001611 GO:0005515
Bva01g01174 318 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 2 69 - -
Bva01g01174 318 ProSiteProfiles Protein kinase domain profile. 1 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01174 Bva-Chr1 10615442 10622036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01174 24 189 Receptor kinase-like Gene Family AT3G11080 29.843 5.89e-15 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Bva01g01174 PK_Tyr_Ser-Thr 3.9e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g01174 - K13420 ahf:112722956 243.817