Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01156 ATGGTTAAGAACAAGTCCAGCTTAGGCCGTCAAAAGATTCCTATGGAGAAAATACCAAACCAAAGTCATCTACAAGTTACATTCTCTAAGAGGCGTTCGGGACTCTTCAAAAAGGCTAGCGAGCTTTGCACTCTCTGCGGGGTTCAGATTTTACTCATGGTCTTTTCTCCTgctggaaaattattttctttcggCCATCCCGATATCGAGTCCATTGTTCACCGCTATCTTACCAGAAATCCACCACTCAATTCTGGCATTCACAAATTTGTTGAGGCACAGcgaaatttgaatattcatGATCTGAACATGCAGCTTTCTCATCTTCTTAATCAATTGGACATTGAGAAAAACCGAGGAGAAATGCTGGATCGAGTGAGAGAAGTTAGGCAGAGGCAGTTTTGGTGGGAGAGGGGTATTGATGAGCTGGGTTTGCAAGAGTTGGAAAAGCTCAAGTTTTCAATGGAGGAGCTAAAGAACAATGTCATAAAACAAGTTAGCAATGTATCGGCGGAGCATGCAGCAAACGGAATTGGACATTCTGAGAAATA 551 0.4011 MVKNKSSLGRQKIPMEKIPNQSHLQVTFSKRRSGLFKKASELCTLCGVQILLMVFSPAGKLFSFGHPDIESIVHRYLTRNPPLNSGIHKFVEAQRNLNIHDLNMQLSHLLNQLDIEKNRGEMLDRVREVRQRQFWWERGIDELGLQELEKLKFSMEELKNNVIKQVSNVSAEHAANGIGHSEK 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01156 183 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 169 - -
Bva01g01156 183 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Bva01g01156 183 PANTHER MADS BOX PROTEIN 7 169 - -
Bva01g01156 183 SUPERFAMILY SRF-like 9 80 IPR036879 GO:0003677|GO:0046983
Bva01g01156 183 Gene3D - 20 86 IPR036879 GO:0003677|GO:0046983
Bva01g01156 183 CDD MADS_MEF2_like 9 78 IPR033896 GO:0000977|GO:0045944
Bva01g01156 183 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Bva01g01156 183 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Bva01g01156 183 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Bva01g01156 183 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Bva01g01156 183 Gene3D - 87 182 - -
Bva01g01156 183 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Bva01g01156 183 Coils Coil 99 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01156 Bva-Chr1 10123885 10124436 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01156 7 168 Type I MADS-box Gene Family AT2G24840 46.988 1.99e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva01g01156 SRF-TF 2.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g01156 - - gmx:100793705 242.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01156 01 10123885 10124436 Bva01g01156 01 10123885 10124436 ECH