Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01136 ATGACTAGAAAGAAGGTGAAGCTCCAATTCATAGACAATGATTCTATGAGAAAAGCCACTttcaagaagagaaagaagggtCTGATCAAGAAGATCAATGAACTTAGCACACTTTGTGATGTTGATGCATGTGCTGTTATTTACAGCCCCTTTGATCCTCAACCTGAGATTTGGCCATCGCCATGGAGGGTCCAAAATGTGCTGAACAAGTTTAGGAAAATGCCTGACTTGGAGCAAAGCAAGAGGATGATGAATCAGGAAAGCTTCATAGCACAAAGGATCTCAAAGACTAATGAGCAGTTGAGAAAGCTGAGAAAAGACAATAGAGAGAAATTGATGACCCAACTCATGTATCAATACCTTAATGTAGGGAAGATTCAGCACAACATGACCATGTCTGATCTCAATGATTTGTCATTGTTTATTGATCAAAATATGATGAAGATCACTAAGAGGATTGATGAGCTAGTGAAGCCTACTTTGAGCCAAATTCAACCTAATGTGGCAGGACAAAATCCCACACCAACATTTGAGATTGCAACCGGAGAAGCACAGGGAGCGGGAACAAACATTGAATGGTTACTAGCCAAGGAGAGGCCAGGCTTGGAGGCGAATATGGGTGGCTTGCAAAATCGACAATGGTTCATGGGCCTCGACAATAACGGCAGGGAAGGGATGTTACCAATTGGAGATGCCAATTACCAAAATCCCTTTTGGTTTAATAccttttttccttg 737 0.3989 MTRKKVKLQFIDNDSMRKATFKKRKKGLIKKINELSTLCDVDACAVIYSPFDPQPEIWPSPWRVQNVLNKFRKMPDLEQSKRMMNQESFIAQRISKTNEQLRKLRKDNREKLMTQLMYQYLNVGKIQHNMTMSDLNDLSLFIDQNMMKITKRIDELVKPTLSQIQPNVAGQNPTPTFEIATGEAQGAGTNIEWLLAKERPGLEANMGGLQNRQWFMGLDNNGREGMLPIGDANYQNPFWFNTFFP 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01136 245 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Bva01g01136 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Bva01g01136 245 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Bva01g01136 245 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 171 - -
Bva01g01136 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 171 - -
Bva01g01136 245 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Bva01g01136 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva01g01136 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva01g01136 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva01g01136 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva01g01136 245 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01136 Bva-Chr1 9752817 9753554 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01136 1 190 Type I MADS-box Gene Family AT5G48670 45.933 1.85e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva01g01136 SRF-TF 7.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g01136 - - gmx:100813231 270.396