Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01105 ATGGGTCGCAAGGGCTTGCCGGTGTCGTCCTCGTCGTCGTTGACGACGGTTTGGGTAGCAGCTACAGAGCTCACCGAATCTTCTTCTTGGTGGAATGATATCAACAAGTCTCCAATCTGGCAGGATCGTTGCCGCCGTGGCTCTGAAAACATGGCAGAAGAGGAAACAAAGCCTAATTATATTTCTGAGATAGttttgaagaagagaaaaaggaatgaAGCACGGGCATTGAGGACAAAGGAACAATTTGAGCAAAATAAGTTCAAAAGCAAGAAGAGCAATGACTATGTCAAAAAGCCTGAGGATTTTATTATAGAGTACCGCAGCAGGGAGCTCGACCTGATAAGAATGAAACAGAGGGCAAAGAGGAAACGACCAGCCCTATTAACACCAAATTCAAAGTTACTAATAATCATCCGGATACAGGGAAAAAATGACATGCATCCAAAAACTCGAAAGGTGTTGTACAGCTTGGGATTGAGAAGAATATTCAGTGCTGTCTTTGTGAAGGCAACTGAAGGAACAATGGATAAACTGCAGAAGGTGGAACCATATGTTACCTATGGGTATCCAAATCTGAAGAGTGTAAAGGAGCTAATTTACAAAAAGGCTCATGCAAAAATAGACAATCAGAAAGTTCCTCTGACAGACAACAACCTTATTGAACAGGAACTTGGGAAACATGGTATTGTATGTCTAGAAGACATGGTGCATGAGGTTGCCAATGTTGGTCCACACTTTAAGGATGTTGTTAGATTTTTGTGGCCCTTTCAACTCAACAAACCAGCAGAAGGCTTAAAAGGATCAAAAACCTTATACAAGGACGGCGGTGACACCGGGAACCGGGAAGATCTGATCAATGAACTcatcaataaaatgaatta 884 0.4095 MGRKGLPVSSSSSLTTVWVAATELTESSSWWNDINKSPIWQDRCRRGSENMAEEETKPNYISEIVLKKRKRNEARALRTKEQFEQNKFKSKKSNDYVKKPEDFIIEYRSRELDLIRMKQRAKRKRPALLTPNSKLLIIIRIQGKNDMHPKTRKVLYSLGLRRIFSAVFVKATEGTMDKLQKVEPYVTYGYPNLKSVKELIYKKAHAKIDNQKVPLTDNNLIEQELGKHGIVCLEDMVHEVANVGPHFKDVVRFLWPFQLNKPAEGLKGSKTLYKDGGDTGNREDLINELINKMN 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01105 294 CDD Ribosomal_L7_archeal_euk 135 294 IPR035808 -
Bva01g01105 294 Pfam Ribosomal L30 N-terminal domain 62 124 IPR012988 -
Bva01g01105 294 PANTHER 60S RIBOSOMAL PROTEIN L7 53 294 IPR039699 -
Bva01g01105 294 PANTHER 60S RIBOSOMAL PROTEIN L7-1 53 294 - -
Bva01g01105 294 Gene3D - 135 237 IPR036919 -
Bva01g01105 294 Gene3D - 238 294 IPR036919 -
Bva01g01105 294 SUPERFAMILY Ribosomal protein L30p/L7e 135 294 IPR036919 -
Bva01g01105 294 TIGRFAM uL30_euk: 60S ribosomal protein uL30 63 294 IPR005998 GO:0000463|GO:0003735|GO:0022625
Bva01g01105 294 Pfam Ribosomal protein L30p/L7e 136 186 IPR016082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01105 Bva-Chr1 9204411 9209533 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01105 51 294 Cytoplasmic Ribosomal Protein Gene Family AT1G80750 56.680 1.71e-88 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g01105 K02937 - gmx:100500005 366.696