Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01096 ATGGTAGCTGGGGCGCCGCAACAGCAACAATTGAATCCTCGATCACAACAGCAACAGCTGCAGCAACAAcatcagcagcagcagcagcaatcTATTCCTTCTGCGCAAGACGAGGCTTTGAAGAGGAACACAGATTGCGTCTACTTTCTCGCCTCACCCTTGACATGCAAAAAGGGGAGTGAATGTGAGTACCGCCATAGTGAGTATGCCCGGGTTAATCCTAGGGATTGCTGGTACTGGCTGAATGGTAATTGCTTGAATCCGAAATGTTCATTCCGTCATCCGCCTCTTGATAGTTTCCTAGGAACACAGGCAACAACTCCTGGTGGATCAGCTGTGGCCGCCCCATCACAAACTGCAACAACTACAGTAGCACATCCTCATAACTCTAGTAAACAATCTGTACCTTGCATTTTCTTCCAAAAGGGGATTTGCTTGAAAGGCGACAGGTGTGCCTTCTTGCATGGACCAAATCCTATTGCTGGTAATAAAGTTCCTCAGGTGCCGGTGGCTAATCAAGAAGCCAAAACTGTTCCAAATGTTGAAACTGCTTCACAAAGAATAGTTGGCGTTGAGAGGCATATGGCACTGCCTCCTACTCAATTTGATGATGAGGCTTCTAGTTTCAGGCAAACAAATGCTCGGCCAGTTGCCAATGGAACCTTTGTTCGCAGGTCTAATCGTCCGAATCCAGGACGCATGCTAGATGATCCTAATATTCATAATGGTAAGGACAACGATGAGTTTTTGAGAGAATCCTCTCCTGGTTTTGATGTTCTTGTTGAGGATGAACTTACGAATTCTGATTACTATCATGGGGAAGATCAATTTGGAAATGCAAGAGGTCAAGATGGAAGAAACTTGGATTCTGTTGATGAATACAATTTAGGTCATTCTGCTGATTATAACTCAGTGGCTGATATTGATCGACAGAGATTTCATGCACCTCAAGGCTATGACTCATATGACCACATGCAAGAACCATATGTTTGGGGACAGCAAAGGAATTCTTCAGAGAGAATCTTTGGTGCCTCGGCCTATTCAGAAGGGAGGAGTCACCGCAAATCTGACAGTCCTGATAATGTTGAGGTCTCAGATCTACGACATCAGTTATCCAAGCGTAGGAGGGTCAATGGTTTGAAATCTGTTGTCAGTAATGATTATTATGACCTTGACAGCCATGGTGAAGAGCAAAGCTACCAAATCTCTTCTCGAAAGGATTCCCACCAATTGCCTCCAAATGAAATCTCCATAAGCAGTCGCTTCCGAGGCAGAATCAAGCTTCCAGTAAATGGTACTGATGATTACCGAGAGAGGGAATCTGATAGAACCAGAAATAGGAGCAGATTGTCACCTGGAAGGCTCCGTGATAGGTTAAGAGGAAAGGTTCACGATGACTATGAGAGGAAAAACTTCAGGGCTAGACCAATGAGGATGGAAATAATGGGTGATGAAAGTGCTGATTTTGCTGGGCCAAAGAGTCTTACTGAACTGAAGGGTGGAACGAGCGCAGAGAATACAGAGCACCAGTCACTTAAGAAGAGAAAGGGTTTACAGGATTTCCATCAACCTGAAGATGATCTTCATTTTGAAGATCCAAAACCTCTCAGCGAGATTCTGAAGGAGAAGAGAGCGGCTACAGCCGGAACAGCTGCCGCCGCCGATATTAAAAGCAATAATAAGGATAGGGAAGCTACAAATGACTCACATAATGCAGTTGTTTTAGATACAGTAAACCCTACAAGTGGCTCGCATAACACAGTTGTATCAGAAACAGAAAACGGGGTTTTGCCGAAGGACGAATCCAAGTTTCAGGTAACTGATGCTTCTGGAAACGACATAGATAAGACATATGCAGCTCAAGGTCAGTCTGAAGATGGAATGATCTATGATGAAGGACTGGAGGAGCAAGAGTACGAGGGTGATGATCAAAGAGATGGGGATGGCGAGTATGATTATGAGCAAGTTGACGAAGGAGAGTATAATTATGAGGAAGGTGAAAATCCAGAGCAGGAAGAATACATGGATGATGAAGATGGGGATGATTTTGCAAAGAAGATTGGACTTCTTACCTA 2075 0.4376 MVAGAPQQQQLNPRSQQQQLQQQHQQQQQQSIPSAQDEALKRNTDCVYFLASPLTCKKGSECEYRHSEYARVNPRDCWYWLNGNCLNPKCSFRHPPLDSFLGTQATTPGGSAVAAPSQTATTTVAHPHNSSKQSVPCIFFQKGICLKGDRCAFLHGPNPIAGNKVPQVPVANQEAKTVPNVETASQRIVGVERHMALPPTQFDDEASSFRQTNARPVANGTFVRRSNRPNPGRMLDDPNIHNGKDNDEFLRESSPGFDVLVEDELTNSDYYHGEDQFGNARGQDGRNLDSVDEYNLGHSADYNSVADIDRQRFHAPQGYDSYDHMQEPYVWGQQRNSSERIFGASAYSEGRSHRKSDSPDNVEVSDLRHQLSKRRRVNGLKSVVSNDYYDLDSHGEEQSYQISSRKDSHQLPPNEISISSRFRGRIKLPVNGTDDYRERESDRTRNRSRLSPGRLRDRLRGKVHDDYERKNFRARPMRMEIMGDESADFAGPKSLTELKGGTSAENTEHQSLKKRKGLQDFHQPEDDLHFEDPKPLSEILKEKRAATAGTAAAADIKSNNKDREATNDSHNAVVLDTVNPTSGSHNTVVSETENGVLPKDESKFQVTDASGNDIDKTYAAQGQSEDGMIYDEGLEEQEYEGDDQRDGDGEYDYEQVDEGEYNYEEGENPEQEEYMDDEDGDDFAKKIGLLT 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01096 691 SUPERFAMILY CCCH zinc finger 132 156 IPR036855 GO:0046872
Bva01g01096 691 ProSiteProfiles Zinc finger C3H1-type profile. 131 158 IPR000571 GO:0046872
Bva01g01096 691 MobiDBLite consensus disorder prediction 346 370 - -
Bva01g01096 691 ProSiteProfiles Zinc finger C3H1-type profile. 71 97 IPR000571 GO:0046872
Bva01g01096 691 MobiDBLite consensus disorder prediction 1 36 - -
Bva01g01096 691 MobiDBLite consensus disorder prediction 487 532 - -
Bva01g01096 691 MobiDBLite consensus disorder prediction 629 679 - -
Bva01g01096 691 MobiDBLite consensus disorder prediction 206 243 - -
Bva01g01096 691 ProSiteProfiles Zinc finger C3H1-type profile. 40 69 IPR000571 GO:0046872
Bva01g01096 691 MobiDBLite consensus disorder prediction 428 460 - -
Bva01g01096 691 MobiDBLite consensus disorder prediction 107 127 - -
Bva01g01096 691 Pfam Zinc-finger containing family 41 96 IPR041686 -
Bva01g01096 691 PANTHER ZINC FINGER CCCH-TYPE-CONTAINING 11A 23 689 - -
Bva01g01096 691 MobiDBLite consensus disorder prediction 549 568 - -
Bva01g01096 691 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 134 157 IPR000571 GO:0046872
Bva01g01096 691 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 23 689 - -
Bva01g01096 691 MobiDBLite consensus disorder prediction 605 619 - -
Bva01g01096 691 MobiDBLite consensus disorder prediction 350 370 - -
Bva01g01096 691 MobiDBLite consensus disorder prediction 577 593 - -
Bva01g01096 691 MobiDBLite consensus disorder prediction 206 226 - -
Bva01g01096 691 MobiDBLite consensus disorder prediction 577 691 - -
Bva01g01096 691 Gene3D - 121 186 - -
Bva01g01096 691 Gene3D - 21 98 - -
Bva01g01096 691 MobiDBLite consensus disorder prediction 508 532 - -
Bva01g01096 691 MobiDBLite consensus disorder prediction 395 460 - -
Bva01g01096 691 SMART c3hfinal6 41 68 IPR000571 GO:0046872
Bva01g01096 691 SMART c3hfinal6 131 157 IPR000571 GO:0046872
Bva01g01096 691 SMART c3hfinal6 73 96 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01096 Bva-Chr1 8993144 9000610 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva01g01096 zf-CCCH_3 2.1e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g01096 - - gmx:100787836 707.597