Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01060 ATGGCTTCTAAATATCAGCAGCAGCTGATGAAGCTGCCTATCCATTTCTTCAAGGTCATACTTACTCGTACCCTTGAAGAAGGAAAACTAATGATTCCAAGCAAGTTTGTGAGGGAATATGGAGAATGTTTACCAAACACAGTATTTCTCAAGCTTCCTAGCGGTGCAGAATGGAAAATCAATGTGGCGAAACACGGTGATCAAGCTTGGTTTGAAAAGGGTTGGAAAGAATTTGCTAAGTGTAACTCTCTAGCCCATGGACATTTCTTGGTTTTCAGATTTGGAGAAACTTCTTGTTTAGAGGTACACATTTTTGACAAGTGTGGCTTGGAGATAGACTACCCCTCGAATCGAGAAGAGGGAAACAGGTTAGCCGAACCTCAAGGATTTCAAGCTCCagagattaatattttgaaagaatgtCCACCTTGCcgaaaaagagaagataacTCACAACCGGCATTTCCTCAACCAAGTAAGAAGACAAGAGCTAATGATGATGGTGAAGTTGAAAGTATGTCCAATCTGCAGAAGGAAACCTTACATCATACCAGCAAAGAATGCAAAGAAAGTTCTAATTTAGCAGAACATAGCCATGGCGTATCTACTTCTAAGTTCCAGAAACAAAAGGCAGTTAGGGGCTTGCAGCAGGCAATGATCACTAAATGTGAAAATGGTAGAGCTCTTGAGAAAGCTAATGCTTTCATGCCTCAAAAGCCATCCTTCCATGTTGTCATGCAACCATCATACATCCATTCACACGTCGCACTGAACATACCAGCTAAGTTTGTTAGGACATACCTTGATTTGGAAAAGAGGAGGGGGATTCTCACTCTAAAGTTGGATGGAAGAGTTTGGCCTGTTAATTTCCTCATTAGGAATGTcagcacaagaaaaagatttgaaCTCTCTACGGGGTGGAAGGCATTTGCTAAGGCCAATAACTTGAATTTAGGTGATGTTTGTGTCTTTGAGCTCATTCACAGGACTGAAATTGCCTTTAGGGTTTCAATCTTCCGAGACTCTGATTGTCCAAATCGTTGCTTTTCCCAAGGTAACCTGAAGCAGCTGAACAAAGAGAAGATCACTGCTGATCTAAAACCTAAAAGGCCATCTGTTAGTGATTCTGGAGTTTATGAAGCATCTGGCAAATCCAACCTAAACTACCCTTCCATCAGAGTAATTATAAAAGCAAGTCATATACAAAGGTCGTCCATGACTCTACCGCAAAGCTTTGACAGAGGGTTTGTGAAGTCTGGTGGACAAATGGTTACTATGCAAGTTGGGGAAAAATCATGGAGGATTAGGTTGATCCATTATCCAAAGATTCCTGCAAGTTACTTTTCTGCAGGTTGGTCAGCATTTGTGAGAGAAAATGCTTTAGAAGCAGGTGATGTTTGCCTCTTCAATTGGGTTAGCACTGATGTGATACAAGTTTCCATTTTCAGGCACTTAGAAGTCTA 1463 0.3978 MASKYQQQLMKLPIHFFKVILTRTLEEGKLMIPSKFVREYGECLPNTVFLKLPSGAEWKINVAKHGDQAWFEKGWKEFAKCNSLAHGHFLVFRFGETSCLEVHIFDKCGLEIDYPSNREEGNRLAEPQGFQAPEINILKECPPCRKREDNSQPAFPQPSKKTRANDDGEVESMSNLQKETLHHTSKECKESSNLAEHSHGVSTSKFQKQKAVRGLQQAMITKCENGRALEKANAFMPQKPSFHVVMQPSYIHSHVALNIPAKFVRTYLDLEKRRGILTLKLDGRVWPVNFLIRNVSTRKRFELSTGWKAFAKANNLNLGDVCVFELIHRTEIAFRVSIFRDSDCPNRCFSQGNLKQLNKEKITADLKPKRPSVSDSGVYEASGKSNLNYPSIRVIIKASHIQRSSMTLPQSFDRGFVKSGGQMVTMQVGEKSWRIRLIHYPKIPASYFSAGWSAFVRENALEAGDVCLFNWVSTDVIQVSIFRHLEV 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01060 487 Pfam B3 DNA binding domain 395 483 IPR003340 GO:0003677
Bva01g01060 487 Pfam B3 DNA binding domain 16 107 IPR003340 GO:0003677
Bva01g01060 487 Pfam B3 DNA binding domain 242 341 IPR003340 GO:0003677
Bva01g01060 487 ProSiteProfiles B3 DNA-binding domain profile. 391 485 IPR003340 GO:0003677
Bva01g01060 487 SUPERFAMILY DNA-binding pseudobarrel domain 386 483 IPR015300 -
Bva01g01060 487 SUPERFAMILY DNA-binding pseudobarrel domain 14 107 IPR015300 -
Bva01g01060 487 MobiDBLite consensus disorder prediction 180 194 - -
Bva01g01060 487 CDD B3_DNA 390 483 IPR003340 GO:0003677
Bva01g01060 487 ProSiteProfiles B3 DNA-binding domain profile. 242 342 IPR003340 GO:0003677
Bva01g01060 487 Gene3D - 219 343 IPR015300 -
Bva01g01060 487 Gene3D - 375 486 IPR015300 -
Bva01g01060 487 SUPERFAMILY DNA-binding pseudobarrel domain 237 344 IPR015300 -
Bva01g01060 487 Gene3D - 11 108 IPR015300 -
Bva01g01060 487 PANTHER B3 DOMAIN-CONTAINING 13 341 - -
Bva01g01060 487 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 369 483 - -
Bva01g01060 487 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 13 341 - -
Bva01g01060 487 ProSiteProfiles B3 DNA-binding domain profile. 15 108 IPR003340 GO:0003677
Bva01g01060 487 CDD B3_DNA 15 106 IPR003340 GO:0003677
Bva01g01060 487 PANTHER B3 DOMAIN-CONTAINING 369 483 - -
Bva01g01060 487 MobiDBLite consensus disorder prediction 146 207 - -
Bva01g01060 487 CDD B3_DNA 240 340 IPR003340 GO:0003677
Bva01g01060 487 SMART B3_2 16 108 IPR003340 GO:0003677
Bva01g01060 487 SMART B3_2 392 485 IPR003340 GO:0003677
Bva01g01060 487 SMART B3_2 242 342 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01060 Bva-Chr1 8381113 8386598 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01060 390 483 B3 DNA Binding Superfamily AT3G18990 34.021 1.98e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bva01g01060 B3 4.4e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g01060 - - ccaj:109791708 293.508