LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva01g01049	ATGGAGAATGTTTACCAAACACAGTATTTCTCAAGCTTCCTAGTGGTGCAGAATGGAAAATCAAAGTGGCGAAATGCGGTGATCAAGCTTGGTTTGAAAAGGGTTGGAAAGAATTTGCTAAGTATAGACTACCCTTCAAATCGAGAAGAGGGAAACAGGTTAGCTGAACCTCAAGGATTTCAAGCTCCagagattaatattttgaaagcatGTCCACCTTGCcgaaaaagagaagataacTCACAACCGGCATTTCTTCGCCCAAGTAAGAAGACGAGAGCTAATGATGATGGTGAAGTTGAAAAACATAGCCACGGCGTATCTACTTCTAAGTTCCAGAAACAAAAGGCAGTTAGGGGCTTGCAGCAGGCAATGATCACTAAATGCGAAAAAGGTAGAGCTCTTGAGAAAGCTAATGCTTTCATGCCTCAAAAGCCATCCTTCCGTGTTGTCATGCAACCATCATACATCCATTCACACGCCGCACTGAACATACCAGCTAAGTTTGTTAGGAACCTTGATTTGGAAAAGAGGAGGGGGATTCTCACTCTAAAGTTGGATGGAAGAGTTTGGCCTGTTAATTTCCTCATTAGGAATGCTAGCACGAGAAAAAGATTTGAACTCTCTACAGGGTGGAAGGCATTTGCTAAGGCCAATAACTTGAATTTAGGTGATGTTTGTGTGTTTGAGCTCATTCACAGGACTGAAATTGCCTTTAGGGTTTCAATCTTCCAAGACTCGGATCGGCCAAATCATTGCTTTTCCCAAGGTAACCTGAAGCAGCTGAACAAAGAGAAGAGCACTGCTGATCTAAAACCTAAAAGGCCATCTGTTAGTGATTCTGGAGTTTATGAAGTATCTGGCAAATCCAACCTAAACTACCCTTCCATCACAGTAATTATAAAAGCAAGACATATACAAAGGTGGTCCATGACTCTACCGCAAAGCTTTGACAGAGGGTTTGTGAAGTCTGGTGGACAAATTGTTACTATGCAAGTTGGGGAAAAATCATGGAGGATTAAGTTAATCCATTATCCACAGATTCCTGCAAGTTACTTTTCTGCAGGTTGGTCAGCATTTGTGAGAGAAAATGCTTTAGAAGTAGGTGATGTTTGCCTCTTCAATTGGGTTAGCACTGATGTGATACAAGTTTCCATTTTCAGGCACTTAGAAGTCTA	1178	0.4049	MENVYQTQYFSSFLVVQNGKSKWRNAVIKLGLKRVGKNLLSIDYPSNREEGNRLAEPQGFQAPEINILKACPPCRKREDNSQPAFLRPSKKTRANDDGEVEKHSHGVSTSKFQKQKAVRGLQQAMITKCEKGRALEKANAFMPQKPSFRVVMQPSYIHSHAALNIPAKFVRNLDLEKRRGILTLKLDGRVWPVNFLIRNASTRKRFELSTGWKAFAKANNLNLGDVCVFELIHRTEIAFRVSIFQDSDRPNHCFSQGNLKQLNKEKSTADLKPKRPSVSDSGVYEVSGKSNLNYPSITVIIKARHIQRWSMTLPQSFDRGFVKSGGQIVTMQVGEKSWRIKLIHYPQIPASYFSAGWSAFVRENALEVGDVCLFNWVSTDVIQVSIFRHLEV	392

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Bva01g01049	392	Pfam	B3 DNA binding domain	301	388	IPR003340	GO:0003677
Bva01g01049	392	Pfam	B3 DNA binding domain	148	245	IPR003340	GO:0003677
Bva01g01049	392	MobiDBLite	consensus disorder prediction	77	114	-	-
Bva01g01049	392	SUPERFAMILY	DNA-binding pseudobarrel domain	143	244	IPR015300	-
Bva01g01049	392	CDD	B3_DNA	146	244	IPR003340	GO:0003677
Bva01g01049	392	ProSiteProfiles	B3 DNA-binding domain profile.	148	247	IPR003340	GO:0003677
Bva01g01049	392	SMART	B3_2	148	247	IPR003340	GO:0003677
Bva01g01049	392	SMART	B3_2	297	390	IPR003340	GO:0003677
Bva01g01049	392	ProSiteProfiles	B3 DNA-binding domain profile.	296	390	IPR003340	GO:0003677
Bva01g01049	392	CDD	B3_DNA	295	388	IPR003340	GO:0003677

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva01g01049	Bva-Chr1	8261729	8264485	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva01g01049	295	388	B3 DNA Binding Superfamily	AT3G18990	29.897	4.77e-08	52.8

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Bva01g01049		B3	4.1e-18	CL0405

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva01g01049	-		-	rcu:8280159	177.948

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