Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01049 ATGGAGAATGTTTACCAAACACAGTATTTCTCAAGCTTCCTAGTGGTGCAGAATGGAAAATCAAAGTGGCGAAATGCGGTGATCAAGCTTGGTTTGAAAAGGGTTGGAAAGAATTTGCTAAGTATAGACTACCCTTCAAATCGAGAAGAGGGAAACAGGTTAGCTGAACCTCAAGGATTTCAAGCTCCagagattaatattttgaaagcatGTCCACCTTGCcgaaaaagagaagataacTCACAACCGGCATTTCTTCGCCCAAGTAAGAAGACGAGAGCTAATGATGATGGTGAAGTTGAAAAACATAGCCACGGCGTATCTACTTCTAAGTTCCAGAAACAAAAGGCAGTTAGGGGCTTGCAGCAGGCAATGATCACTAAATGCGAAAAAGGTAGAGCTCTTGAGAAAGCTAATGCTTTCATGCCTCAAAAGCCATCCTTCCGTGTTGTCATGCAACCATCATACATCCATTCACACGCCGCACTGAACATACCAGCTAAGTTTGTTAGGAACCTTGATTTGGAAAAGAGGAGGGGGATTCTCACTCTAAAGTTGGATGGAAGAGTTTGGCCTGTTAATTTCCTCATTAGGAATGCTAGCACGAGAAAAAGATTTGAACTCTCTACAGGGTGGAAGGCATTTGCTAAGGCCAATAACTTGAATTTAGGTGATGTTTGTGTGTTTGAGCTCATTCACAGGACTGAAATTGCCTTTAGGGTTTCAATCTTCCAAGACTCGGATCGGCCAAATCATTGCTTTTCCCAAGGTAACCTGAAGCAGCTGAACAAAGAGAAGAGCACTGCTGATCTAAAACCTAAAAGGCCATCTGTTAGTGATTCTGGAGTTTATGAAGTATCTGGCAAATCCAACCTAAACTACCCTTCCATCACAGTAATTATAAAAGCAAGACATATACAAAGGTGGTCCATGACTCTACCGCAAAGCTTTGACAGAGGGTTTGTGAAGTCTGGTGGACAAATTGTTACTATGCAAGTTGGGGAAAAATCATGGAGGATTAAGTTAATCCATTATCCACAGATTCCTGCAAGTTACTTTTCTGCAGGTTGGTCAGCATTTGTGAGAGAAAATGCTTTAGAAGTAGGTGATGTTTGCCTCTTCAATTGGGTTAGCACTGATGTGATACAAGTTTCCATTTTCAGGCACTTAGAAGTCTA 1178 0.4049 MENVYQTQYFSSFLVVQNGKSKWRNAVIKLGLKRVGKNLLSIDYPSNREEGNRLAEPQGFQAPEINILKACPPCRKREDNSQPAFLRPSKKTRANDDGEVEKHSHGVSTSKFQKQKAVRGLQQAMITKCEKGRALEKANAFMPQKPSFRVVMQPSYIHSHAALNIPAKFVRNLDLEKRRGILTLKLDGRVWPVNFLIRNASTRKRFELSTGWKAFAKANNLNLGDVCVFELIHRTEIAFRVSIFQDSDRPNHCFSQGNLKQLNKEKSTADLKPKRPSVSDSGVYEVSGKSNLNYPSITVIIKARHIQRWSMTLPQSFDRGFVKSGGQIVTMQVGEKSWRIKLIHYPQIPASYFSAGWSAFVRENALEVGDVCLFNWVSTDVIQVSIFRHLEV 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01049 392 Pfam B3 DNA binding domain 301 388 IPR003340 GO:0003677
Bva01g01049 392 Pfam B3 DNA binding domain 148 245 IPR003340 GO:0003677
Bva01g01049 392 MobiDBLite consensus disorder prediction 77 114 - -
Bva01g01049 392 SUPERFAMILY DNA-binding pseudobarrel domain 143 244 IPR015300 -
Bva01g01049 392 CDD B3_DNA 146 244 IPR003340 GO:0003677
Bva01g01049 392 ProSiteProfiles B3 DNA-binding domain profile. 148 247 IPR003340 GO:0003677
Bva01g01049 392 SMART B3_2 148 247 IPR003340 GO:0003677
Bva01g01049 392 SMART B3_2 297 390 IPR003340 GO:0003677
Bva01g01049 392 ProSiteProfiles B3 DNA-binding domain profile. 296 390 IPR003340 GO:0003677
Bva01g01049 392 CDD B3_DNA 295 388 IPR003340 GO:0003677
Bva01g01049 392 PANTHER B3 DOMAIN-CONTAINING 277 388 - -
Bva01g01049 392 PANTHER B3 DOMAIN-CONTAINING 37 245 - -
Bva01g01049 392 SUPERFAMILY DNA-binding pseudobarrel domain 291 388 IPR015300 -
Bva01g01049 392 MobiDBLite consensus disorder prediction 77 108 - -
Bva01g01049 392 Gene3D - 281 391 IPR015300 -
Bva01g01049 392 Gene3D - 125 248 IPR015300 -
Bva01g01049 392 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 277 388 - -
Bva01g01049 392 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 37 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01049 Bva-Chr1 8261729 8264485 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01049 295 388 B3 DNA Binding Superfamily AT3G18990 29.897 4.77e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bva01g01049 B3 4.1e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g01049 - - rcu:8280159 177.948