Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00992 ATGTCAGAGTCAAACGCAGTAGCAAATGGTTTGGCTGGCGCCGGTGGCGGCATTATTGCTCAAATCATAACCTATCCCCTTCAAACAGTAAATACTCGACAGCAAACCGAAAGAACGctacagaagaagaaaaaagaagaaggccCAGTTCATTCCCCTAATACACTTCTTCAGATACTCCAGGTTATTAGAACTGAGGGATGGGGTGGACTGTACAGTGGACTCAAGCCTTCTCTTTTTGGAACTGCTGCTTCTCAGGGAGTCTACTACTTCTTTTATCAAGCTTTAAAAAACAAGGCTGTGGCCATTGCAGTTGCCCGTAAAGTCAAAGGACATGGAGATGGTACTGTTGGAATGTTTGGTTGGCTTGTTGTAGCTGCAATAGCTGGGTCCTTGAATGTATTGCTAACTATCCCAATATGGGTTCTGGTTACTCGTATGCAGACGCAAACTcaagcagaaagaaaaattatggaagcaaagaaagaagcttTAATGAGGGAACTTTCTGAAAGCGGCTCAGAAGATTCAAcattacaaaacaaattggCTGAACTTGAATCTACAAAACCTCAGCCATATGGGACTTTACATGCAGCAAAGGAAGTATATAATGAAGCAGGTATTACTGGATTTTGGAAGGGTGTCATTCCTTCACTTATTATGGTGTGCAATCCATCAATCCAGTTTATGATCTATGAAAGCTCGTTAAAGCACCTCAGGGCAAGACGTGCTGCTAAGAAGCAAGGAAATAGAAGTATAACTGCTTTGGAGGTCTTTTTGGTGGGTGCTATAGCAAAACTTGGAGCAACTGTCTCAACATATCCCCTCCTCGTTGTCAAGTCAAGGCTTCAAGCAAAACAGGAGATAGGTGGAAATAACTCATTAAGATACTCAGGTACCTTTGATGCAATGCTTAAAATGATCCGTTACGAGGGGTTGCCGGGTTTTTATAAAGGGATGAGCACAAAGATAGTGCAGAGTGTTTTTGCGGCTTCGGTACTATTCATGATCAAGGAAGAGCTTGTCAAGGGTTTCATGGTGCTGGCAGATAAGAGCAAGAAgATTACCCTGGAGAATGTCCGTTCAAGATCCAATGAACAATCCACAAGgCCCAATATGGCTAGGGCAGCCTCTCTTCAATTTCTGGGTTCTTTGAAGCTTTGTTTTGCATCATTGTCAGTAGCCATGGCTCCAAAAAGAGGTGGAAAAGCTCCAGTTGCAGCTGCTAAGAAGAAGCCTGAGAAGGTAGCGAACCCTCTCTTCGAGAAGCGTCCAAAGCAGTTTGGGATTGGAGGGGCATTGCCTCCAAAGAGGGACCTGACCCGGTTCGTGAAATGGCCAAAGACAGTGCAAAtccagaggaagaagaggataCTCAAGCAAAGGTTGAAGGTCCCACCAGCTTTGAACCAGTTCACCAAGACCCTTGACAAGAACCTTGCAACAAACCTGTTCAAGATGCTTCTTAAGTACAGGCCTGAGGATAAAGCTGAAAAGAAGGAGCGCCTTTTAAAAAGGGCTCAGGCAGAGGCTGAAGGGAAAACTGCTGAAGCTAAGAAGCCTATTGTTGTAAAATATGGTCTCAATCATGTTACCTACCTTATTGAGCAGAATAAAGCACAGTTGGTCGTCATTGCCCATGATGTAGATCCAATTGAATTGGTTGTCTGGCTTCCAGCACTGTGCAGGAAGATGGAAATTCCGTACTGCATTGTCAAGGGCAAGGCACGATTGGGATCGATTGTCCACAAGAAAACTGCATCAGTTTTGTGCTTAACGACTGTGAAGAATGAAGACAAACTAGAATTCAGCAAGATCCTAGAGGCTATCAAGgCTAACTTCAATGACAAGTACGATGAGTACCGGAAAAAGTGGGGTGGTGGTATCATGGGCTCCAAATCCCAAGCCAGAACCAAGGCCAAGGAAAGGCTTCTTGCCAAGGAAGCTGCTCAGAGAATGTCGTA 1967 0.4225 MSESNAVANGLAGAGGGIIAQIITYPLQTVNTRQQTERTLQKKKKEEGPVHSPNTLLQILQVIRTEGWGGLYSGLKPSLFGTAASQGVYYFFYQALKNKAVAIAVARKVKGHGDGTVGMFGWLVVAAIAGSLNVLLTIPIWVLVTRMQTQTQAERKIMEAKKEALMRELSESGSEDSTLQNKLAELESTKPQPYGTLHAAKEVYNEAGITGFWKGVIPSLIMVCNPSIQFMIYESSLKHLRARRAAKKQGNRSITALEVFLVGAIAKLGATVSTYPLLVVKSRLQAKQEIGGNNSLRYSGTFDAMLKMIRYEGLPGFYKGMSTKIVQSVFAASVLFMIKEELVKGFMVLADKSKKITLENVRSRSNEQSTRPNMARAASLQFLGSLKLCFASLSVAMAPKRGGKAPVAAAKKKPEKVANPLFEKRPKQFGIGGALPPKRDLTRFVKWPKTVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKAEKKERLLKRAQAEAEGKTAEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKYDEYRKKWGGGIMGSKSQARTKAKERLLAKEAAQRMS 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00992 655 SUPERFAMILY L30e-like 485 626 IPR029064 -
Bva01g00992 655 PRINTS Ribosomal protein L7A family signature 426 443 IPR001921 -
Bva01g00992 655 PRINTS Ribosomal protein L7A family signature 487 500 IPR001921 -
Bva01g00992 655 PRINTS Ribosomal protein L7A family signature 614 634 IPR001921 -
Bva01g00992 655 PRINTS Ribosomal protein L7A family signature 463 482 IPR001921 -
Bva01g00992 655 PRINTS Ribosomal protein L7A family signature 582 606 IPR001921 -
Bva01g00992 655 PRINTS Ribosomal protein L7A family signature 521 541 IPR001921 -
Bva01g00992 655 PRINTS Ribosomal protein L7A family signature 443 460 IPR001921 -
Bva01g00992 655 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 512 602 IPR004038 -
Bva01g00992 655 ProSiteProfiles Solute carrier (Solcar) repeat profile. 254 345 IPR018108 -
Bva01g00992 655 ProSiteProfiles Solute carrier (Solcar) repeat profile. 4 99 IPR018108 -
Bva01g00992 655 Gene3D - 447 630 IPR029064 -
Bva01g00992 655 Pfam Mitochondrial carrier protein 4 98 IPR018108 -
Bva01g00992 655 Pfam Mitochondrial carrier protein 254 346 IPR018108 -
Bva01g00992 655 Pfam Mitochondrial carrier protein 117 240 IPR018108 -
Bva01g00992 655 PANTHER BNAA03G47020D PROTEIN 350 653 - -
Bva01g00992 655 Coils Coil 148 168 - -
Bva01g00992 655 Coils Coil 498 518 - -
Bva01g00992 655 ProSitePatterns Ribosomal protein L7Ae signature. 563 580 IPR004037 GO:0042254|GO:1990904
Bva01g00992 655 Gene3D Mitochondrial carrier domain 176 389 IPR023395 -
Bva01g00992 655 PRINTS Ribosomal protein L7A/RS6 family signature 570 584 IPR018492 -
Bva01g00992 655 PRINTS Ribosomal protein L7A/RS6 family signature 525 539 IPR018492 -
Bva01g00992 655 PRINTS Ribosomal protein L7A/RS6 family signature 560 570 IPR018492 -
Bva01g00992 655 PRINTS Ribosomal protein L7A/RS6 family signature 544 557 IPR018492 -
Bva01g00992 655 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 350 653 - -
Bva01g00992 655 ProSiteProfiles Solute carrier (Solcar) repeat profile. 117 239 IPR018108 -
Bva01g00992 655 SUPERFAMILY Mitochondrial carrier 5 341 IPR023395 -
Bva01g00992 655 Gene3D Mitochondrial carrier domain 1 169 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00992 Bva-Chr1 7711264 7721513 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00992 397 655 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 85.714 2.05e-164 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00992 K13354 - gmx:100775304 560.836