Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00989 ATGTTTGGTCTTCGTGGTTCTGTTGGAATTGTTTCTGATGTTGCTCGCCAACTTCGTCCAACACTATCGCTTCATGGTTTATGGGtacaatatataaacattGGTGGGGGTGTTGGAGGGGATATCCCTGATAACAAGCGCCTTAAGTATGCTCTTCAGCACATCCATGGAATTGGCCGTGCCAAATCTCACCAAATTGTATGTGAGCTTGGGGTTGAGAACAAACATGTCAAGGAGCTAAGTAAAAGAGAACTATATCATCTGCGCGAGTTGCTTTCCAAACACTTGATTGCAAATGAATTAAGGAAAGTTGTTGAAAAAGATGTGCAGACTTTGGTCAGCATCCAGTGTTATAAAGGATTGAGGCATATGGATGGGTTACCCTGCAGAGGACAGCGCACACACACGAATGCCCGCACCAGAAGGAGTAAACCAACTTTCAATGCATCAAGATG 455 0.433 MFGLRGSVGIVSDVARQLRPTLSLHGLWVQYINIGGGVGGDIPDNKRLKYALQHIHGIGRAKSHQIVCELGVENKHVKELSKRELYHLRELLSKHLIANELRKVVEKDVQTLVSIQCYKGLRHMDGLPCRGQRTHTNARTRRSKPTFNASR 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00989 151 Gene3D 30s ribosomal protein s13, domain 2 105 151 IPR027437 -
Bva01g00989 151 Hamap 30S ribosomal protein S13 [rpsM]. 31 150 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Bva01g00989 151 ProSitePatterns Ribosomal protein S13 signature. 119 132 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Bva01g00989 151 ProSiteProfiles Ribosomal protein S13 family profile. 38 143 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Bva01g00989 151 MobiDBLite consensus disorder prediction 129 151 - -
Bva01g00989 151 Gene3D - 38 103 - -
Bva01g00989 151 Pfam Ribosomal protein S13/S18 39 140 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Bva01g00989 151 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 3 147 - -
Bva01g00989 151 SUPERFAMILY S13-like H2TH domain 39 143 IPR010979 GO:0003676
Bva01g00989 151 PANTHER SMALL RIBOSOMAL SUBUNIT PROTEIN S13, MITOCHONDRIAL 3 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00989 Bva-Chr1 7680975 7683997 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00989 41 139 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 26.016 5.83e-06 42.0