Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00955 ATGGGAAACCTGCTAAGGCTTCactcttctttctcattcctCTGCTTTCTCTTGCTATCTACCTGGGTAGGACTTCTGTTTGCTGTGGAGTTAATACCAATAGGTGTAGTTCTTGATACGAATTCCTCTGTTGGAACTGTGGCTCAGAGCTGCATATCCATGGCACGTTCGGATTTCTATGAACGCCATCCTAACTATAGAACTAAACTTGATCTTCGAATCAGGGACTCGGAGAATGACGTCGTCACTGCAGCATCCGCAGCATTAGATTTAATCGAGAATGAAAGGGTGCATGCAATTATTGGACCTCAAACATCAGAGCATGCTAAGTTTATAATTGAGCTTGGTGCCAAAGCTAAGATACCAATAATCTCATTTTCTGCTACAAGTCCCACTCTTTACCCAACCAGAAACCAATTCTTCATTCGCACTGCACAAGATGATTGTTCTCAGGTGAAAGCCATAGCTTCCATCATTGGAGCTTTCGGTTGGCGAGAAATTGTCCCAATTTATGAAAACACAGAATATGGCAAAGGTCTGATCCCATGTCTCAATGATGCCTTTGAAGCAATTGACACACGAGTCCCTTACAGAAGTGTCATTGACCCTCGTTCATATGAAACCCAGATTCTAGAAGAACTACACAAGATTACTAATCACAccttaacaaaaatatttcttgttcATATGACAAAAGAACTTGGATCCAAGTTTTTCCCAGCTGCTGAGAAAGCTGGGATGATGACAGAGGGATATGCATGGATAGTCACTGAAGGGCTTTCTTCTTTGCTAGATCCTATGGAACCAGAAGTGATAAACTCCATGCAAGGGGTCTTGGGAGTAAGGCCAAGAGTTCCCAACACCACTAGGGTTGAGGACTTTAGGAAAAGGTGGAATAGTTCCACTGAAGTGACACTGTTTGGATTGTGGGCTTATGACACTGTTTGGGCGTTGGCAATGGCTGTAGAGAAAGCTGGGATAACAAATTCTACATcacagaagaaaaatgatacaaaTAACAGCACAGGAATACTTGATTTTGCAGATGTAAGAATATCTGAAACAGGTCCAAGGCTTCTTAATGAAATTCTAACTACAAAATTCCGCGGCCTCTCTGGGGATTTCAGTTTGGTTAATGGAACACTAGAACCATCAAGACTTGAGATTTTCAATGTGAGAGAACAAAACGAGTATATAATTGGATATCGtccaaaggaagaaaatttccCAGATGCAAAACTAAAACTCCAAGATCCAAAATGGCCTGGCAATGCAAAAGAGAAGCCAACAAAGTTGAGAATTGGAATCCCAGGAAGAGAGAATATTAAAGAGTACTCAAAAGTggtaaacttttcttttgatatttttgatgCAGTGGTGAAAAATTTAACCTTTCcccttttttatgaatttcacTCATTTGGTGGAACCTATGATGAACTTCTTATGCAAATCCAAAACAAGACGTTAGATGCTGTAGTCGGAGACATAATAATTGTCGCTAATCGCTCAAACAATGTAGATTTTACATTGCCATTTTCAGAATCAAGTGTTGCAATGGTGGTTTCGGTGAAACATGATGAGAGAAATAACATATGGATTTTCTTAAAACCTCTAAGTTGGGGTCTTTGGTTGACAATTGGTGCAGCCTTCATGCTCACAGGTTTCATTATATGGATTCTGGAACACCGAACAAACACAGAGTTCAGAGGCGGCAAAAATCAACAACTTGGCATGATCTTCTGGTTTTCCTTCTCAACACTTGTCTTTGCTCATAAGGAGAGAGTGGTGAATAATTGGTCACGATTTGTGTTGATTGTATGGGTATTGGCAGTGTTGATCATAACACAAAGTTACGCTGGAAGTTTAGCATCAATTTTAACTGTTCAAAGATTGCAGCCTGCATTCTTGGATGTAAACgagataaagagaaataattactCTGTGGGTTATCAAAACGGATCCTTTTTGAAAGGTTTCCTCATAGCAGAGTTAGGATTCAACGAGTCTAAATTGAAGCCTTGTGATAGTCCTGAAGACTACCATCACGCACTCTTACTTGGATGCAAAAATGGTGCTGGTGTTGCTGCAATCTTTGGTGAAACCTTCTTTCTTAACCTCTTCCTCCAGAAATATGGCTCTAGGTATAAGATGGTTGGACCAACCTACAATACTGGTGGCTTTGGCTTTGCATTCCCAAAAAAATCTCCTCTTGTCTCATACATTTCAAGGGCAATCTTAGAAGTCACtgaagataaagataaattcgggaatattacaaaaaaatacttcCCAGATGGAATTGTACATGGAGATCAAAGTGACTCTATTTCATCCGATTGTCCAAGTCTTACATTGAAAAGCTTTGGAGGAGATCCTACACATCCTTTGGGCTACAAGATAAGGTTttg 2411 0.3754 MGNLLRLHSSFSFLCFLLLSTWVGLLFAVELIPIGVVLDTNSSVGTVAQSCISMARSDFYERHPNYRTKLDLRIRDSENDVVTAASAALDLIENERVHAIIGPQTSEHAKFIIELGAKAKIPIISFSATSPTLYPTRNQFFIRTAQDDCSQVKAIASIIGAFGWREIVPIYENTEYGKGLIPCLNDAFEAIDTRVPYRSVIDPRSYETQILEELHKITNHTLTKIFLVHMTKELGSKFFPAAEKAGMMTEGYAWIVTEGLSSLLDPMEPEVINSMQGVLGVRPRVPNTTRVEDFRKRWNSSTEVTLFGLWAYDTVWALAMAVEKAGITNSTSQKKNDTNNSTGILDFADVRISETGPRLLNEILTTKFRGLSGDFSLVNGTLEPSRLEIFNVREQNEYIIGYRPKEENFPDAKLKLQDPKWPGNAKEKPTKLRIGIPGRENIKEYSKVVNFSFDIFDAVVKNLTFPLFYEFHSFGGTYDELLMQIQNKTLDAVVGDIIIVANRSNNVDFTLPFSESSVAMVVSVKHDERNNIWIFLKPLSWGLWLTIGAAFMLTGFIIWILEHRTNTEFRGGKNQQLGMIFWFSFSTLVFAHKERVVNNWSRFVLIVWVLAVLIITQSYAGSLASILTVQRLQPAFLDVNEIKRNNYSVGYQNGSFLKGFLIAELGFNESKLKPCDSPEDYHHALLLGCKNGAGVAAIFGETFFLNLFLQKYGSRYKMVGPTYNTGGFGFAFPKKSPLVSYISRAILEVTEDKDKFGNITKKYFPDGIVHGDQSDSISSDCPSLTLKSFGGDPTHPLGYKIRF 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00955 803 Pfam Receptor family ligand binding region 49 393 IPR001828 -
Bva01g00955 803 Gene3D - 533 658 - -
Bva01g00955 803 Pfam Bacterial extracellular solute-binding proteins, family 3 451 765 IPR001638 -
Bva01g00955 803 Gene3D - 37 152 - -
Bva01g00955 803 SMART GluR_14 431 766 IPR001320 GO:0015276|GO:0016020
Bva01g00955 803 Gene3D - 712 770 - -
Bva01g00955 803 PIRSF IGluLR_plant 4 791 IPR017103 -
Bva01g00955 803 Gene3D - 425 532 - -
Bva01g00955 803 PANTHER GLUTAMATE RECEPTOR 32 791 - -
Bva01g00955 803 SUPERFAMILY Periplasmic binding protein-like II 429 766 - -
Bva01g00955 803 CDD PBP1_GABAb_receptor_plant 34 402 IPR044440 -
Bva01g00955 803 SUPERFAMILY Periplasmic binding protein-like I 32 402 IPR028082 -
Bva01g00955 803 Pfam Ligand-gated ion channel 540 695 IPR001320 GO:0015276|GO:0016020
Bva01g00955 803 Gene3D - 153 317 - -
Bva01g00955 803 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 791 - -
Bva01g00955 803 CDD GluR_Plant 431 764 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00955 Bva-Chr1 7386274 7391984 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00955 13 791 Ion Channels AT2G29110 42.457 0.0 608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00955 K05387 - qsu:111985464 873.233