Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00948 ATGGGAAACCTGCTAAGGCTTCactcttctttctcattcctCTGCTTTCTCTTGCTATCTACCTGGGTAGGACTTCTGTTTGCTGTGGAGTTAATACCAATTGGTGTAGTTCTTGATACGAATTCCTCTGTTGGAACTGTGGCTCAGAGCTGCATATCCATGGCACTCTTGGATTTCTATGAACGCCATCCTAACTATAGAACTAAACTTGATCTTCGAATCAGGGACTCAGAAAATGACGTCGTCACCGCAGCATCTGCAGCGTTAGATTTAATCGAGAATGAAAGGGTGCATGCAATTATTGGACCTCAAACATCAGAGCATGCTAAGTTTATAATTGAGCTTGGTGCCAAAGCTAAGATACCAATAATCTCATTTTCTGCTACAAGTCCCTCTCTTTCCCCAACTAGAAACCAATTCTTCATTCGCACTGCACAAGATGATTGTTCTCAGGTGAAAGCTATAGCTTCCATCATTGAATTTTATGGTTGGCGAGAAATTGTCCCAATTTATGAAAACACAGAATATGGCAAAGGTCTGATCCCATATCTCAACGATGCCTTTGAAGCAAATGACACAAGAGTGCCTTATAGAAGTGTCATTGACCCTCGTTCTAATGAAACTCAAATTCTGGAAGAACTACGCAAGATCGCTAATAACACTCGCACAAGAATATTTCTTGTTCATATGAGAACAGAACTTGGATCCAAGTTTTTCCCAGCTGCTGAGAAAGCTGGGATGATGACAGAGGGATATGCATGGATAGTCACTGAAGGGCTTTCTTCTTTGCTAGACCCTATGGAACCAGAAGTGATAAACTCCATGCAAGGGGTCTTGGGAGTAAGGCCAAGAGTTCCCAACACCACTAGGGTTGAGGACTTTAGGAAAAGGTGGAATAGTTCCACTGAAGTGACACTGTTTGGATTGTGGGCTTATGACACTGTTTGGGCATTGGCAATGGCTGTAGAGAAAGCTGGGATAACAAATTCTACatcacagaaaaaaaatgatactaaGAGCACAGGAATACTTGATTTTGCAGATGTAAGAATATCTGAAACAGGTCCAAGGCTTCTTCATGAAATTCTAGCTACTAAATTCCGTGGCCTCTCTGGGGATTTCAGTTTGGTTAATGGAACACTAGAACCATCAAGACTTGAGATTTTCAATGTGAGAGAACAAAACGAGTATATAATTGGATATTGtccaaaggaagaaaatttccCATATGCAAAACTAAAACTCCAAGAGCCAAAATGGCCTGGCAATGCGAAAGAGAAGCCAACAAAGTTGAGAATTGGAATCCCAGTAAGACAGAATCAGAATAATAATGAGTTCTCAAAAGTggaaaacttttcttttgatatttttgatgCAGTAGTGAAACATTTAACCTTTCCCCTTTCTTATGAATTTCTCCAATTTGGTGGAACCTATGATGATCTTCTTAATGAAATCCAAAACAAGACATTTGATGCTGTAGTAGGAGACATAACAATTGTCGCTGATCGCTCAAAAAATGTAGATTTTACATTGCCATTTTCAGAATCAAGTGTGGCAATGGTGGTTTCGGTGAAACATGATGAGAGAAATAACATGTGGATTTTCTTAAAACCTCTAAGTTGGGGTCTATGGTTGACAATAGGTGCAGCCTTCATGCTCACAGAGGAGAGAGTGGTGAATAATTGGTCACGCTTTGTGTTGATTATATGGGTATTGGTAGTATTGATCATAACACAAAGTTACGCTGGAAgtttatcatcaattttaactGTTCAAAGTTTACAGCCTGCATTCTTGGATGTAAACgagataaagagaaataattactCTGTGGGGTATCAAAAAGGATCCTTTTTGAAAGGTTTCCTCATAGAAGAGTTAGGATTCAATGCGTCTAAATTGAAGCCTTATGATAGTCCTGAAGATTACCATCACGCACTCTTACTTGGATGCAAAAATGGTGCTGGTGTTGCTGCAATCTTTGATGAAACCCTCTTTCTTAACCTCTTCCTCCAGAAATATGGCTCTAGGTATAAGATGGTTGGACCAACCTACAATACTGGTGGCTTTGGCTTTGCATTCCCAAAAAAATCTCCTCTTGTCTCATACATTTCAAGGGCAATCTTAGAAGTCACtgaagataaagataaatttgggaatattacaataaaatactTCCCAGATGGAATTGTAAATGGAGATCAAAGTGACTCGATTTCATCAGATTGTCCAAGTCTTACATTGAAAAGCTTTGGAGGTCTCTTTATCATCACATTTGGCACTTCACTTCTTTGCCTCCTGTTCTATGTGCTGAACTTCTTCCGTTCTAAATGGCCTGCCATGAAAACATCCTTTTTTGATaggatttctttttggatGATAATATCCCATATGGCAAAGTATCTTTTCTTGGACAGAAGTCATCTATCTAATGGAAATAATCCCAGAGACCCTTCTTCTAGTCCAGGAAGAAATGGAGATTGCATGGAGAACCACCAAAGAACTCACAATCAAGAAGTGGATAATGTTActgtaaatgaata 2546 0.3704 MGNLLRLHSSFSFLCFLLLSTWVGLLFAVELIPIGVVLDTNSSVGTVAQSCISMALLDFYERHPNYRTKLDLRIRDSENDVVTAASAALDLIENERVHAIIGPQTSEHAKFIIELGAKAKIPIISFSATSPSLSPTRNQFFIRTAQDDCSQVKAIASIIEFYGWREIVPIYENTEYGKGLIPYLNDAFEANDTRVPYRSVIDPRSNETQILEELRKIANNTRTRIFLVHMRTELGSKFFPAAEKAGMMTEGYAWIVTEGLSSLLDPMEPEVINSMQGVLGVRPRVPNTTRVEDFRKRWNSSTEVTLFGLWAYDTVWALAMAVEKAGITNSTSQKKNDTKSTGILDFADVRISETGPRLLHEILATKFRGLSGDFSLVNGTLEPSRLEIFNVREQNEYIIGYCPKEENFPYAKLKLQEPKWPGNAKEKPTKLRIGIPVRQNQNNNEFSKVENFSFDIFDAVVKHLTFPLSYEFLQFGGTYDDLLNEIQNKTFDAVVGDITIVADRSKNVDFTLPFSESSVAMVVSVKHDERNNMWIFLKPLSWGLWLTIGAAFMLTEERVVNNWSRFVLIIWVLVVLIITQSYAGSLSSILTVQSLQPAFLDVNEIKRNNYSVGYQKGSFLKGFLIEELGFNASKLKPYDSPEDYHHALLLGCKNGAGVAAIFDETLFLNLFLQKYGSRYKMVGPTYNTGGFGFAFPKKSPLVSYISRAILEVTEDKDKFGNITIKYFPDGIVNGDQSDSISSDCPSLTLKSFGGLFIITFGTSLLCLLFYVLNFFRSKWPAMKTSFFDRISFWMIISHMAKYLFLDRSHLSNGNNPRDPSSSPGRNGDCMENHQRTHNQEVDNVTVNE 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00948 848 PIRSF IGluLR_plant 4 556 IPR017103 -
Bva01g00948 848 PIRSF IGluLR_plant 553 844 IPR017103 -
Bva01g00948 848 Pfam Receptor family ligand binding region 50 392 IPR001828 -
Bva01g00948 848 MobiDBLite consensus disorder prediction 814 829 - -
Bva01g00948 848 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 552 776 - -
Bva01g00948 848 CDD GluR_Plant 430 715 - -
Bva01g00948 848 Pfam Bacterial extracellular solute-binding proteins, family 3 452 727 IPR001638 -
Bva01g00948 848 SMART GluR_14 432 729 IPR001320 GO:0015276|GO:0016020
Bva01g00948 848 Gene3D - 405 556 - -
Bva01g00948 848 Gene3D - 154 317 - -
Bva01g00948 848 SUPERFAMILY Periplasmic binding protein-like II 429 716 - -
Bva01g00948 848 Gene3D - 61 153 - -
Bva01g00948 848 SUPERFAMILY Periplasmic binding protein-like I 32 403 IPR028082 -
Bva01g00948 848 CDD PBP1_GABAb_receptor_plant 34 401 IPR044440 -
Bva01g00948 848 Gene3D - 557 620 - -
Bva01g00948 848 PANTHER GLUTAMATE RECEPTOR 552 776 - -
Bva01g00948 848 PANTHER GLUTAMATE RECEPTOR 32 555 - -
Bva01g00948 848 Pfam Ligand-gated ion channel 728 761 IPR001320 GO:0015276|GO:0016020
Bva01g00948 848 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 555 - -
Bva01g00948 848 MobiDBLite consensus disorder prediction 814 848 - -
Bva01g00948 848 SMART AABind_6 430 730 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00948 Bva-Chr1 7293609 7299132 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00948 13 775 Ion Channels AT2G29110 40.261 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00948 K05387 - jre:109004626 835.869