Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00947 ATGTTTCTCTCCCTTTTCATACTATCTACCTTGGCTGTGGAGTTAATACCAATAGGGGTTGTTCTTGATTTGAATTCCTCTGTTGGAACTGTGACTCAGAGCTGCATATCCATGGCACTCTTGGATTTCTATGAACGCCATCCTAACTACAGAACTAAATTTGATCCTCGAATCAGGGACTCGGAGAATGATGTTGTCACTGCAGCATCTGCAGCTTTCGGCTGGCGAGAAATTGTCCCAATCTATGAAAACACAGAATATGGCAAAGGTCTGATCCCATGTCTCAATGATGCCTTTGAAGCAATAGACAGTCGAGTCCCTTACAGAAGTGTCATTGACCCTCGTTCTAATGGAACCCAGATTCTAGAAGAGCTACACAAGATTACTAATCAcactttaacaaaaatatttcttgttcATATGACAAAAGAACTTGGATCCAAGTTTTTCCCAGCTGCAGAGAAAGCTGGGATGATGAGAGAGGGATATGCATGGATAGTCACTGAAAGGCTATCTTCTTTGCTGGAACCTATGGAACCAGAAGTGATAAACTCCATGCAAGGGGTCTTGGGAGTAAGGCCAAAAGTTCCCAACACCACTAGGGTTGAGGACTTTAGGAAAAGGTGGAATAGTTCCACTGAAGTGACACTGTTTGGATTGTGGGCTTATGACACTGTTTGGGCATTGGCAATGGCTGTAGAGAAAGCTGGGTTAACAAATTCTACATCACAGAAGAAATATGATACTAATAACAGCACAGGAATACTTGATTTTGCAGATGTAAGAATATCTGAAACAGGTCCAAGGATTCTTAATGAAATTCTAGCTACTAAATTCTGCGGCCTCTTTGGGAATTTCAGTTTGGTTAATGGAACACTAGAACCATCAAGACTTGAGATTTTCAATGTGAGAGATCAAAAAGAGTATATAATTGGATATTGgccaaaggaagaaaatttccCAGATGCAAAACTAAAACTCCAAGATCCGAAATGGCCTGGCAATGCAAAAGAGAAGCCAACAAAGTTGAGAATTGGAATCCCAGTAAGACAGAATCAGAATAATAATGTGTTCTCAAAAGTGGAAAACttctcttttgatatttttgaagaAGTGGTGAAAAATTTAACCTTTCcccttttttatgaatttctcCCATTTGGTGGAACCTATGATGAACTTCTTATGCAAATCCAAAACAAGGAGTTTGATGCTGTAGTTGGGGACATAACAATTGTTGCTAATCGCTCAAACGACATAGATTTTACATTGCCATTTTTTGAATCAAGTGTGGCAATGGTGGTTTCGATGAAACATgatgagagaaataaaatgtggATTTTCGTAAGACCTCTAAGTTGGAAGCTTTGGCTGACAACTGGTTTAGCCTTCATCTTCACAGGTTTCATTGTATGGATTTTGGAACACCGAACAAACACAGAGTTCAGAGGCAGCAAAAAGCAACAACTTGGCATGATCTTCTGGTTTTCCTTCTCAACGCTTGTCTTTGCTCATAGTAATCACTA 1526 0.3742 MFLSLFILSTLAVELIPIGVVLDLNSSVGTVTQSCISMALLDFYERHPNYRTKFDPRIRDSENDVVTAASAAFGWREIVPIYENTEYGKGLIPCLNDAFEAIDSRVPYRSVIDPRSNGTQILEELHKITNHTLTKIFLVHMTKELGSKFFPAAEKAGMMREGYAWIVTERLSSLLEPMEPEVINSMQGVLGVRPKVPNTTRVEDFRKRWNSSTEVTLFGLWAYDTVWALAMAVEKAGLTNSTSQKKYDTNNSTGILDFADVRISETGPRILNEILATKFCGLFGNFSLVNGTLEPSRLEIFNVRDQKEYIIGYWPKEENFPDAKLKLQDPKWPGNAKEKPTKLRIGIPVRQNQNNNVFSKVENFSFDIFEEVVKNLTFPLFYEFLPFGGTYDELLMQIQNKEFDAVVGDITIVANRSNDIDFTLPFFESSVAMVVSMKHDERNKMWIFVRPLSWKLWLTTGLAFIFTGFIVWILEHRTNTEFRGSKKQQLGMIFWFSFSTLVFAHSNH 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00947 508 Pfam Ligand-gated ion channel 453 504 IPR001320 GO:0015276|GO:0016020
Bva01g00947 508 Pfam Receptor family ligand binding region 63 304 IPR001828 -
Bva01g00947 508 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 16 67 - -
Bva01g00947 508 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 65 506 - -
Bva01g00947 508 SUPERFAMILY Periplasmic binding protein-like I 65 315 IPR028082 -
Bva01g00947 508 Gene3D - 445 508 - -
Bva01g00947 508 Gene3D - 63 228 - -
Bva01g00947 508 Gene3D - 336 444 - -
Bva01g00947 508 PANTHER GLUTAMATE RECEPTOR 65 506 - -
Bva01g00947 508 PANTHER GLUTAMATE RECEPTOR 16 67 - -
Bva01g00947 508 SUPERFAMILY Periplasmic binding protein-like II 342 461 - -
Bva01g00947 508 Pfam Bacterial extracellular solute-binding proteins, family 3 364 438 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00947 Bva-Chr1 7285313 7288041 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00947 16 73 Ion Channels AT2G29120 46.552 9.47e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00947 K05387 - gmx:100800495 475.322