Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00856 ATGGATATGAAGGCTGCTAGAAAAACTGAACGATTCAGTGGGGAAACCTGTGCACATTGGCTTGCTGGGAGGTGCAACAGAAACCATTGTAGGTTTTTGCACAAAGAAACACCATTACCATCTCCTGAATATCATGATGCTGCTGGTACTCATCTCTATGCGAGGCAATCCCACTCCTTTAGTGAGAACCCCCCTAAATATAACTCAAAGAAAGTATCTATTAAGAAGATTGGAGGAGGTGGGACAAACAAAGCTAAGAATACTCAGAAGTCATCGCGAAGTATCTGTAGATACTGGATGAATAGCAATTGTGTACGTGGTGATCAGTGCTGGAACTTGCATTCATGGTTTGATGGGGATGATGGGCTTTCAACACTGGCGAAGCTACAAGAACACAAGAAGGCCATCACTGGAATTACTCTCCCAGTTGGATCGGACAAACTTTATTCTGGAAGTAGTGATGGGACAGTTCGGATGTGGGACTGCAATACTGGTAAATGCGCAAATGTAATAAAGCTTGGTGCAGAAGTTGGGTGTTTGATCAGTGAGGGGCCATGGGTGTTTGTTGGTGTGCCAAATGCTGTCAAGGCTTGGAACACTCAAACAGCTGCTGAGTTTGTTCTCAATGGGCCCCGTGGCCAAGTCTTTGCAATGATTGTTGCCAATGATACACTTTTTGCTGGAGCACAGGATGGCATTATTTCTGCATGGAGAGGCAGTTTTGGAACTGAGTGCCCTTTTGAACTGGTGGCGTCACTAAGTGGCCACACTAGAGCTGTGGTTTGTCTAGCTGTTGGAGGCAAGATGCTCTTCTCAGGTTCCACGGACCATAGCATAAAGGTCTGGGATGTTGATACATTACAATGTACAATGACACTGAATGGGCACACTGATGTGGTGATGTCCCTCATTTGTTGGGACCATTTTTTGCTGTCATGCTCGTTGGATGGCACTGTGAAGGTCTGGGTTGCCACCGAGCAAGGGAGTTTGAAAGTAACATACACACACAATGAAGAACATGGAGTTCTTGCACTCTGTGGGATGACTGATGCTGATGCTAAGCCGATCTTGTTTTGCTCGTGCAATGACAATATAGTTCGCGCATATGATTTGCCATCTTTTTCCCAGAGGGTTCGATTATTTGCGAAAAAAGAAGTTCGAGAAATTGAGATAGGTCCTGGAGGGCTCTTCTTCACGGGAGATGGAAGTGGTTTGCTAATGGTGTGGAAATGGTTGGCAGAACCCAAGATGGCTTCTTCATG 1262 0.4556 MDMKAARKTERFSGETCAHWLAGRCNRNHCRFLHKETPLPSPEYHDAAGTHLYARQSHSFSENPPKYNSKKVSIKKIGGGGTNKAKNTQKSSRSICRYWMNSNCVRGDQCWNLHSWFDGDDGLSTLAKLQEHKKAITGITLPVGSDKLYSGSSDGTVRMWDCNTGKCANVIKLGAEVGCLISEGPWVFVGVPNAVKAWNTQTAAEFVLNGPRGQVFAMIVANDTLFAGAQDGIISAWRGSFGTECPFELVASLSGHTRAVVCLAVGGKMLFSGSTDHSIKVWDVDTLQCTMTLNGHTDVVMSLICWDHFLLSCSLDGTVKVWVATEQGSLKVTYTHNEEHGVLALCGMTDADAKPILFCSCNDNIVRAYDLPSFSQRVRLFAKKEVREIEIGPGGLFFTGDGSGLLMVWKWLAEPKMASS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00856 420 ProSiteProfiles Trp-Asp (WD) repeats profile. 129 170 IPR001680 GO:0005515
Bva01g00856 420 PRINTS G protein beta WD-40 repeat signature 148 162 IPR020472 -
Bva01g00856 420 PRINTS G protein beta WD-40 repeat signature 270 284 IPR020472 -
Bva01g00856 420 PRINTS G protein beta WD-40 repeat signature 310 324 IPR020472 -
Bva01g00856 420 SMART WD40_4 327 370 IPR001680 GO:0005515
Bva01g00856 420 SMART WD40_4 246 283 IPR001680 GO:0005515
Bva01g00856 420 SMART WD40_4 374 410 IPR001680 GO:0005515
Bva01g00856 420 SMART WD40_4 122 161 IPR001680 GO:0005515
Bva01g00856 420 SMART WD40_4 286 323 IPR001680 GO:0005515
Bva01g00856 420 SMART WD40_4 201 238 IPR001680 GO:0005515
Bva01g00856 420 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 129 161 - -
Bva01g00856 420 ProSiteProfiles Zinc finger C3H1-type profile. 90 117 IPR000571 GO:0046872
Bva01g00856 420 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 9 419 - -
Bva01g00856 420 Pfam WD domain, G-beta repeat 248 283 IPR001680 GO:0005515
Bva01g00856 420 Pfam WD domain, G-beta repeat 288 322 IPR001680 GO:0005515
Bva01g00856 420 Pfam WD domain, G-beta repeat 126 161 IPR001680 GO:0005515
Bva01g00856 420 MobiDBLite consensus disorder prediction 58 88 - -
Bva01g00856 420 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 253 286 - -
Bva01g00856 420 ProSiteProfiles Trp-Asp (WD) repeats profile. 293 322 IPR001680 GO:0005515
Bva01g00856 420 Gene3D - 14 117 - -
Bva01g00856 420 PANTHER - 9 419 IPR044715 -
Bva01g00856 420 Gene3D - 118 208 IPR015943 GO:0005515
Bva01g00856 420 Gene3D - 223 418 IPR015943 GO:0005515
Bva01g00856 420 SUPERFAMILY CCCH zinc finger 91 115 IPR036855 GO:0046872
Bva01g00856 420 SMART c3hfinal6 91 116 IPR000571 GO:0046872
Bva01g00856 420 SMART c3hfinal6 11 36 IPR000571 GO:0046872
Bva01g00856 420 ProSitePatterns Trp-Asp (WD) repeats signature. 270 284 IPR019775 -
Bva01g00856 420 ProSiteProfiles Trp-Asp (WD) repeats profile. 253 292 IPR001680 GO:0005515
Bva01g00856 420 ProSiteProfiles Zinc finger C3H1-type profile. 11 37 IPR000571 GO:0046872
Bva01g00856 420 SUPERFAMILY WD40 repeat-like 125 411 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00856 Bva-Chr1 6121182 6124593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00856 178 322 Acyl Lipid Metabolism Gene Families AT3G18860 33.557 4.59e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva01g00856 WD40 0.0024 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00856 - - aprc:113849178 598.971