Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00846 ATGGTGGTGGGGCTTCCTTCAGCTACAAATGGGAACAGATGGATTAATAAGGAAAGGCTTGGATTTGCTGAAATTCTCTTATCTTCCTCTCTTTCAATCTCACTGGGCTTTATCTCTCCTACTTGTAAGGAGGTAAAGATGGTGAGAGGGAAGACTCAGATGAAGCGTATAGAGAACGCAACAAGCAGGCAAGTCACCTTCTCCAAGCGACGCAATGGCCTTCTCAAAAAGGCCTATGAGCTTTCTGTTCTTTGTGATGCAGAGGTAGCTCTCATTATCTTCTCTCCAAGAGGGAAGATGTATGAATTTGCAAGCGCCAGTGTGCAGGGCTCAATAGAACGCTACCGCACGCATACTAGAGATACTCAAGCAGCCAACAAGTCCTCTGAACAAAATATGCAGCATTTGAAGCAAGAAGCTGCAAGCATGATGAAGAATATTGAGCAACTTGAAGCAGCAAAGAGAAAACTTCTGGGAGATGGCTTAGGATCATGCACAGTGGAAGAACTCCAACAGATAGAACAACAGTTGGAGAGGAGTGTAAGCAGTGTTCGAGCAAGAAAGACTCAGGTGTACAAGGAACAAATTGAGCaactaaaagaaaagGAAAAAGCCCTAGAATCTGAAAATGCAAGGCTCTCTGAGAAGTACAATTTCCAGGATAAGCAATTAAATAAGGATCAGAGACAAAACCAAGCCTTTGATTTAGAAAGTAGTCCCAGTTCAGATGTTGTTACTGAATTGTTCATTGGACTACCAGAAATGAGAACAACACGTGTCCCTGCTACTTA 791 0.4248 MVVGLPSATNGNRWINKERLGFAEILLSSSLSISLGFISPTCKEVKMVRGKTQMKRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSPRGKMYEFASASVQGSIERYRTHTRDTQAANKSSEQNMQHLKQEAASMMKNIEQLEAAKRKLLGDGLGSCTVEELQQIEQQLERSVSSVRARKTQVYKEQIEQLKEKEKALESENARLSEKYNFQDKQLNKDQRQNQAFDLESSPSSDVVTELFIGLPEMRTTRVPAT 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00846 263 Pfam K-box region 129 217 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva01g00846 263 PANTHER MADS BOX PROTEIN 47 254 - -
Bva01g00846 263 ProSiteProfiles K-box domain profile. 133 223 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva01g00846 263 SMART madsneu2 47 106 IPR002100 GO:0003677|GO:0046983
Bva01g00846 263 Coils Coil 189 223 - -
Bva01g00846 263 Coils Coil 167 187 - -
Bva01g00846 263 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 56 103 IPR002100 GO:0003677|GO:0046983
Bva01g00846 263 MobiDBLite consensus disorder prediction 224 241 - -
Bva01g00846 263 PANTHER MADS-BOX PROTEIN SOC1 47 254 - -
Bva01g00846 263 Gene3D - 59 142 IPR036879 GO:0003677|GO:0046983
Bva01g00846 263 ProSiteProfiles MADS-box domain profile. 47 107 IPR002100 GO:0003677|GO:0046983
Bva01g00846 263 MobiDBLite consensus disorder prediction 217 241 - -
Bva01g00846 263 ProSitePatterns MADS-box domain signature. 49 103 IPR002100 GO:0003677|GO:0046983
Bva01g00846 263 SUPERFAMILY SRF-like 49 126 IPR036879 GO:0003677|GO:0046983
Bva01g00846 263 CDD MADS_MEF2_like 49 121 IPR033896 GO:0000977|GO:0045944
Bva01g00846 263 Coils Coil 119 160 - -
Bva01g00846 263 PRINTS MADS domain signature 49 69 IPR002100 GO:0003677|GO:0046983
Bva01g00846 263 PRINTS MADS domain signature 69 84 IPR002100 GO:0003677|GO:0046983
Bva01g00846 263 PRINTS MADS domain signature 84 105 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00846 Bva-Chr1 6059935 6068431 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00846 47 204 MADS-box Gene Family AT2G45660 76.582 3.10e-87 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bva01g00846 K-box 6.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00846 - - gmx:100037477 286.189