Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00844 atgggtCGAGGGAGAGTTGAACTGAAGAGGATAGAGAACAAAATCAACCGCCAGGTTACTTTCTCGAAAAGAAGGAATGGTTTGCTCAAGAAAGCCTATGAACTCTCTGTGCTGTGTGATGCTGAGGTTGCCCTTATCATTTTCTCTAGCCGTGGCAAGCTCTATGAGTTTGGAAGCTCTGGTGTTACCAAGACCCTTGAAAGATACCAGCGCTGCTCCTTTACTCCTCAAGACAACACTGTTGAACGTGAAACTCagAGCTGGTTCCAAGAGGTGTCAAAGCTAAAGGGAAAGTATGAGTCTCTTCAAAGGACTCAAAGGCATTTGCTTGGGGAAGATCTTGGACCGTTGAGCATGAAAGAGCTGATAAATCTTGAGAAGCAGCTTGAAGGAGCCCTAGCACAAGCTAGGCAAAGGAGGACCCAAATTATGATTGAACAAATGGAAGATCTTCGCAGAAAGGAACGCCACCTTGGAGATGTTAACAAGCAGCTCAGACTTAAGCTTGAATCAGAGGGGTTTAATCTTAAAACCATTGAAAGCTTGTGGGGCTCTAGTTCGGCAGCACCTGGAAACACCAGCTTTCTCATGCACTCTTCTCAAATCAACCCCATGGAATGTCAAGCAGATCCCAATTTCTTGCAAATAGGGTACCATCATTATGTTCAAGCTGAGACGTCAAGTGTTACAAAGACCATGGCTGCAGAGACTAACTTCATGCAGGGGTGGGTCCTTTG 737 0.4505 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSSGVTKTLERYQRCSFTPQDNTVERETQSWFQEVSKLKGKYESLQRTQRHLLGEDLGPLSMKELINLEKQLEGALAQARQRRTQIMIEQMEDLRRKERHLGDVNKQLRLKLESEGFNLKTIESLWGSSSAAPGNTSFLMHSSQINPMECQADPNFLQIGYHHYVQAETSSVTKTMAAETNFMQGWVL 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00844 245 PANTHER MADS-BOX TRANSCRIPTION FACTOR 17 1 231 - -
Bva01g00844 245 Coils Coil 119 142 - -
Bva01g00844 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva01g00844 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva01g00844 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva01g00844 245 Pfam K-box region 82 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva01g00844 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva01g00844 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bva01g00844 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bva01g00844 245 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Bva01g00844 245 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Bva01g00844 245 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva01g00844 245 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Bva01g00844 245 PANTHER MADS BOX PROTEIN 1 231 - -
Bva01g00844 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00844 Bva-Chr1 6049731 6053999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00844 1 245 MADS-box Gene Family AT2G45650 65.217 5.85e-115 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bva01g00844 K-box 4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00844 K09264 - tcc:18614251 394.045