LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva01g00817	ATGGTCGTACTCTTGCTGATTACAAATATACAGAAGGAATCGACCCTTCACTTGGTTTTGCGGCTGAGAGGTGGAATGcaaatttttgtgaaaactcTCACTGGGAAGACCATAACTTTAGAGGTGGAAAGTTCTGATACAATCGACAATGTCAAGGCAAAGATACAGGATAAGGAGGGTATCCCGCCTGATCAGCAGAGGCTCATCTTTGCTGGTAAGCAGCTTGAAGATGGTCTCACCCTGGCCGATTACAACATCCAGAAGGAATCAACTCTTCACTTGGTTTTGAGGCTTCGTGGTGGCATgcaaatttttgttaagaCCCTAACGGGGAAAACTATTACCTTGGAGGTGGAGAGTTCTGATCCTATTGATAACGTGAAAGCAAAGATTCAGGACAAGGAGGGCGTTCCCCCAGATCAGCAGAGGTTAATTTTTGCTGGGAAGCAATTGGAAGATGGTCGTACTTTGGCTGATTACAATATCCAGAAGGAGTCCACACTCCATCTTGTCCTTCGTCTCCGTGGTGGCTTCTA	536	0.4366	MVVLLLITNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGLTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDPIDNVKAKIQDKEGVPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF	178

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva01g00817	178	PANTHER	UBIQUITIN	9	177	-	-
	Bva01g00817	178	PRINTS	Ubiquitin signature	112	132	IPR019956	-
	Bva01g00817	178	PRINTS	Ubiquitin signature	154	175	IPR019956	-
	Bva01g00817	178	PRINTS	Ubiquitin signature	133	153	IPR019956	-
	Bva01g00817	178	SUPERFAMILY	Ubiquitin-like	101	177	IPR029071	-
	Bva01g00817	178	Gene3D	-	24	101	-	-
	Bva01g00817	178	Gene3D	-	102	178	-	-
	Bva01g00817	178	SUPERFAMILY	Ubiquitin-like	5	101	IPR029071	-
	Bva01g00817	178	PANTHER	-	9	177	-	-
	Bva01g00817	178	CDD	Ubl_ubiquitin	26	101	-	-
	Bva01g00817	178	ProSitePatterns	Ubiquitin domain signature.	128	153	IPR019954	-
	Bva01g00817	178	ProSitePatterns	Ubiquitin domain signature.	52	77	IPR019954	-
	Bva01g00817	178	CDD	Ubl_ubiquitin	102	177	-	-
	Bva01g00817	178	Pfam	Ubiquitin family	104	175	IPR000626	GO:0005515
	Bva01g00817	178	Pfam	Ubiquitin family	28	99	IPR000626	GO:0005515
	Bva01g00817	178	ProSiteProfiles	Ubiquitin domain profile.	102	177	IPR000626	GO:0005515
	Bva01g00817	178	ProSiteProfiles	Ubiquitin domain profile.	26	101	IPR000626	GO:0005515
	Bva01g00817	178	SMART	ubq_7	26	97	IPR000626	GO:0005515
	Bva01g00817	178	SMART	ubq_7	102	173	IPR000626	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva01g00817	Bva-Chr1	5909883	5911381	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva01g00817	102	178	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	96.104	5.96e-49	153

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva01g00817	-		K08770	sind:105176719	325.865