Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00812 ATGAGTTTTTTACAGGGACTCATTGACTCGCTTTACTCCGTTTTCTCTTCCCCCAACTCTTCTGATGATTCTCAGCAAAATCCCACCTTTTCccgttcttcttcttctccaccAATGGAAGGCGTAGCTGGGCCTTCAGTTTCCAATGAACGAGTCGCTTATAAGCTCAAAGGGTTCTTTGATttggccaaggaagagattgCCAAAGCTGTTAGGGCCGAAGAGTGGGGCTTGATCGATGATGCTATTCTTCACTATAAGAACGCCCAGCGAATTCTGATTGAAGCTAGTTCAACTAATGCGCCTTCCTTCATCAGTTCCAGTGAACAAGAGAAGGTGAAATCATATCgtcaaaaaatatcaaaatggcAAGGCCAAGTTGCTGAGAGATTACAGACTCTAAGTAGACGAGCAGGTAGCACACCTACTAATCAGAGCACCTCAACTCGTGCACAAACAGCATCAGTTTCAATTACTCCATCAAATGCTAGAAGAAGCATGCCACAAAAGTATCCCCAAAGAACTAATCAGACAGATAAAGTTGCAAGCCCAAAATTAAGTCAAGTTCCCGGAACAAATTATGATGCAAAATTGGTTGAAATGATTAATACTGCAATAGTAGATAGAAGTCCTTCAGTTAGATGGGAAGATGTTGCTGGTCTTGAAAAGGCGAAGCAAGCTCTAATGGAAATGGTTATTTTACCAACTAAGAGAAGGGACTTGTTCACTGGTCTTCGGAGGCCAGCTAGAGgtTTGCTTCTCTTTGGTCCACCTGGTAATGGAAAAACCATGCTTGCTAAAGCAGTGGCTTCAGAATCAGaagcaactttttttaatgtcacTGCAGCTTCGTTGACATCAAAATGGGTGGGTGAAGCTGAAAAGCTTGTCCGGACTCTATTCATGGTAGCAGTATCCAGACAGCCATCTGTCATTTTCATTGATGAGATTGATAGCATTATGTCAACAAGGTTGGCTAATGAGAATGATGCAAGCAGACGACTGAAATCTGAATTTCTAATTCAGTTTGATGGCGTGACCTCCAATCCTGATGATATTGTTATTGTCATTGgtGCCACCAATAAGCCACAAGAATTGGACGATGCAGTTCTTAGAAGACTGgttaaaagaatatacataCCTTTGCCAGATGAAAATGTTCGAAGACTTCTATTGAAAACCAAACTCAAGGGTCAAGCATTCTCCTTACCTGGTAGAGATTTAGAAACGCTTGTAAAGGAGACCGAAGGATATTCTGGAAGCGATCTACAAGCTTTGTGCGAAGAAGCTGCAATGATGCCAATCAGAGAACTGGGTTCTGATATTCTCACTGTTAAGGCAAATCAGGTAAGAGGGCTGAGGTTTGAGGATTTTAAGAAGGCTATGACAGTGATTAGACCAAGCTTAAACAAAAGCAAGTGGGAAGAACTTGAACGTTGGAATGAGGAGTTTGGCTCTAATTG 1463 0.393 MSFLQGLIDSLYSVFSSPNSSDDSQQNPTFSRSSSSPPMEGVAGPSVSNERVAYKLKGFFDLAKEEIAKAVRAEEWGLIDDAILHYKNAQRILIEASSTNAPSFISSSEQEKVKSYRQKISKWQGQVAERLQTLSRRAGSTPTNQSTSTRAQTASVSITPSNARRSMPQKYPQRTNQTDKVASPKLSQVPGTNYDAKLVEMINTAIVDRSPSVRWEDVAGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESEATFFNVTAASLTSKWVGEAEKLVRTLFMVAVSRQPSVIFIDEIDSIMSTRLANENDASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYIPLPDENVRRLLLKTKLKGQAFSLPGRDLETLVKETEGYSGSDLQALCEEAAMMPIRELGSDILTVKANQVRGLRFEDFKKAMTVIRPSLNKSKWEELERWNEEFGSN 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00812 487 SMART AAA_5 248 384 IPR003593 -
Bva01g00812 487 SMART smart 56 133 IPR007330 -
Bva01g00812 487 MobiDBLite consensus disorder prediction 17 46 - -
Bva01g00812 487 Pfam AAA+ lid domain 407 441 IPR041569 -
Bva01g00812 487 Gene3D - 48 138 - -
Bva01g00812 487 PANTHER BNAC04G50250D PROTEIN 4 487 - -
Bva01g00812 487 Gene3D - 211 481 IPR027417 -
Bva01g00812 487 MobiDBLite consensus disorder prediction 17 42 - -
Bva01g00812 487 Gene3D - 383 465 - -
Bva01g00812 487 ProSitePatterns AAA-protein family signature. 354 373 IPR003960 GO:0005524|GO:0016887
Bva01g00812 487 CDD MIT_spastin 56 134 - -
Bva01g00812 487 MobiDBLite consensus disorder prediction 135 189 - -
Bva01g00812 487 CDD AAA 237 382 - -
Bva01g00812 487 Pfam ATPase family associated with various cellular activities (AAA) 252 382 IPR003959 GO:0005524|GO:0016887
Bva01g00812 487 PANTHER AAA DOMAIN-CONTAINING 4 487 - -
Bva01g00812 487 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 484 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00812 Bva-Chr1 5895400 5901364 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00812 211 437 Calmodulin-binding Proteins AT3G56690 42.797 6.87e-48 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00812 K13254 - gmx:100780946 773.081