Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00750 ATGGGAGCCTTTCGCTCACTCTTAGCCCTTTTAATCATtccctttctatttttgtccCTTGTCTCTGGTAAACGTCATTGGGCTGATGACGTTAAAGAATGGTGTAGCCAAACCCCTTACCCTAAACCATGTGAGTACTTTTTGACCAACAAACCTTCTTCAAACATCACATGCAAGTCTGATTTCCTCAAGCTTTCCCTTGAGCTAGCCCTAGAGAGAGCCCTAACTGGCCAAAAGAACACTCGTTCACTTGGCCCTAAATGCCGAAACTCAAGTGACAAGCTTGCATGGGAGGATTGCCTTGAGCTCTACGAAAGCACCATCGAGAAGCTCAACAAAACCATAGACCCTAAGAAGAAGTGTTCCCAAAAAGATGCTCAAACCTGGCTCAGCTCGGCTGTCACCAACCTTGAGACATGCATACTAGGCTTTTATGACCTTGGTGTTCCAGACTATTTGTTACCATTGTTGTCTAACAATGTTACCAAGTTGCTAAGCAATACCTTGTCTCTAAACAAGGATGAttctccaccaccaccaccaagtTATAAAGATGGATTCCCCACGTGGGTCAACCCCGGTGACCGGAAGCTGCTGCAGACGGCTTCCCCGGCTGCGCAGGCTAATGTCGTGGTGGCTAAAGATGGCTCCGGCAAGTACACAACCGTGAGTGCCGCGGTGAATGCTGCCCCAAAGAGTAGCAGTGGGAGGTATGTGATATATGTGAAGGCTGGAGTATATAATGAACAGGTTGAGGTAAAGGGAAATAATATCATGTTGGTGGGAGATGGCATTGGAAGAACTATTATCACCGGTAGCAAAAGTGTTGGAGGGGGCTCCACAACCTTTCGTTCTGCCACTGTTGctGCTGTTGGAGATAGGTTTATTGCTCGAGACATCACATTCAGAAACACTGCTGGACCAACAAATCATCAAGCCGTGGCATTCCGTTCTGGTTCAGATCTATCAGTATTTTATAGATGCAGCTTTGAAGGCTATCAAGACACATTATATGTCCATTCCGAGAGGCAATTCTACAGAGAATGTAACATTTATGGCACAgttgactttatttttggcaatGCAGCTGCCGTTTTGCAAAACTGCAACATCTATGCCAGAAACCCTCCTCAGAGAACCATCACATATACTGCTCAAGGCAGAACTGATCCAAACCAGAACACTGGAATTGTAATTCACAATTCAAGGATTACCGGCGCCTCGGATTTTAATCCTAGTGGGGTTAAGGTCTATCTAGGGAGGCCATGGAAGGAATACTCAAGAACAGTGATCATGAAAACTTATATTGATGGTTTCCTTAACCCTGCTGGTTGGATGGAATGGAGTGGTAATTTTGCCCTAAATACTTTGTATTATGGAGAGTACTTAAACACTGGACCGGGTTCATCTACAGCAAACCGAGTCAAATGGAAGGGTTATCATGTGATTACTTCAGCAACTGAGGCCTCGAGATTCACCGTTGGGAGCTTCCTTGCAGGAAACTCTTGGATACCAGCTAGTGGTGTGCCTTTCACTTCTGGTCTCTA 1547 0.4376 MGAFRSLLALLIIPFLFLSLVSGKRHWADDVKEWCSQTPYPKPCEYFLTNKPSSNITCKSDFLKLSLELALERALTGQKNTRSLGPKCRNSSDKLAWEDCLELYESTIEKLNKTIDPKKKCSQKDAQTWLSSAVTNLETCILGFYDLGVPDYLLPLLSNNVTKLLSNTLSLNKDDSPPPPPSYKDGFPTWVNPGDRKLLQTASPAAQANVVVAKDGSGKYTTVSAAVNAAPKSSSGRYVIYVKAGVYNEQVEVKGNNIMLVGDGIGRTIITGSKSVGGGSTTFRSATVAAVGDRFIARDITFRNTAGPTNHQAVAFRSGSDLSVFYRCSFEGYQDTLYVHSERQFYRECNIYGTVDFIFGNAAAVLQNCNIYARNPPQRTITYTAQGRTDPNQNTGIVIHNSRITGASDFNPSGVKVYLGRPWKEYSRTVIMKTYIDGFLNPAGWMEWSGNFALNTLYYGEYLNTGPGSSTANRVKWKGYHVITSATEASRFTVGSFLAGNSWIPASGVPFTSGL 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00750 515 SUPERFAMILY Pectin lyase-like 203 514 IPR011050 -
Bva01g00750 515 SMART PMEI_2 26 171 IPR006501 GO:0004857
Bva01g00750 515 Pfam Plant invertase/pectin methylesterase inhibitor 30 171 IPR006501 GO:0004857
Bva01g00750 515 ProSitePatterns Pectinesterase signature 2. 351 360 IPR033131 -
Bva01g00750 515 TIGRFAM PME_inhib: pectinesterase inhibitor domain 8 173 IPR006501 GO:0004857
Bva01g00750 515 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 174 IPR035513 -
Bva01g00750 515 Gene3D - 203 515 IPR012334 -
Bva01g00750 515 Pfam Pectinesterase 209 501 IPR000070 GO:0030599|GO:0042545
Bva01g00750 515 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 173 IPR035513 -
Bva01g00750 515 PANTHER PECTINESTERASE 7 514 - -
Bva01g00750 515 ProSitePatterns Pectinesterase signature 1. 234 253 IPR018040 -
Bva01g00750 515 CDD PMEI-like_3 34 173 - -
Bva01g00750 515 PANTHER PECTINESTERASE 7 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00750 Bva-Chr1 5443496 5446599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00750 1 515 Carbohydrate Esterase AT2G45220 64.162 0.0 683