Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00722 ATGGAGAAGCACAAGTGTAAGCTCTGCTTCAGGAACTTCTCTAATGGAAGAGCCTTGGGGGGTCACATGAGGTCTCACATGATGAGCCTTCCTGTTCCGCCGAAACCGGAGGAGTCACCACCGCATGTTCAGCTGAGCTTCGAGGCGGAGTCAGCTTCGTTTCCGTCGTCGTTTTCGTCGGAAGGGGACGATAAGGGTCTCGGCTACGGGCTGAGGGAGAATCCCAAGAGAAGCATTCGCCTCGTGGATCCTCAATTTTCGCTTGCCGTTGTAGATTCTGGCTCGGTGATTCTTCAGGACAGAGAGAGCGAGACCGAGTCGTCGAAAAACCCAACTCGGAGACGATCCAAACGCGCTTGGAAAGTAGGGATTCTAGATGATCAGCATAATAAATCTAACAAATCCGTTAAGACCGAGTCGTGGACAGAGCCTGAACCGGCGAGTTCAATCTCTGAAACCACCACCGATGAAGATGTAGCCGTTTGCCTCATGATGCTTTCGAGGGACAAATGGAAGAGACAAGGACAAAACGGAAACCAGAACGACGATGAAGAAGAGGACGAAGAAGAACAGCAGGATGAAGCTGAGAAATCCATGGATGATAGTGATGATTCAGAGGAGCTGAAATCGTCCAAGCCCAGAGTTCGCGGAAGGTATAAATGTGAAACGTGCAAGAAAGTCTTTCGATCTTATCAAGCACTTGGTGGGCACAGAGCGAGTCATAAGAAGATCAAAGCGGATCATAGCATTAACAACACACTGTGCGACCCAGAATTGGAACAAGTAAATGCTGGAACTTCAGCTCCTCCCACGGCGGATAGTAAGAAAGTTCATCAATGCCCAGTTTGTCTAAGAGTGTTTTCTTCAGGTCAAGCACTTGGCGGGCACAAGAGAACCCACGTCACAGGTTCAGCAAGCCCACTTCCAACTCCAACCAAGTTCGTAGAATCTCTCATAGATCTTAATCTCCCTGCTCCAATGGACGACGATGACATTAGCCAGTTCGAGAACTCTGCAGTTTCAGATGCAGAATTCGTCAACCCCATTAGGCAATG 1055 0.491 MEKHKCKLCFRNFSNGRALGGHMRSHMMSLPVPPKPEESPPHVQLSFEAESASFPSSFSSEGDDKGLGYGLRENPKRSIRLVDPQFSLAVVDSGSVILQDRESETESSKNPTRRRSKRAWKVGILDDQHNKSNKSVKTESWTEPEPASSISETTTDEDVAVCLMMLSRDKWKRQGQNGNQNDDEEEDEEEQQDEAEKSMDDSDDSEELKSSKPRVRGRYKCETCKKVFRSYQALGGHRASHKKIKADHSINNTLCDPELEQVNAGTSAPPTADSKKVHQCPVCLRVFSSGQALGGHKRTHVTGSASPLPTPTKFVESLIDLNLPAPMDDDDISQFENSAVSDAEFVNPIRQ 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00722 351 Gene3D Classic Zinc Finger 216 300 - -
Bva01g00722 351 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Bva01g00722 351 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 347 IPR044303 GO:0006355
Bva01g00722 351 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 347 - -
Bva01g00722 351 ProSitePatterns Zinc finger C2H2 type domain signature. 221 241 IPR013087 -
Bva01g00722 351 MobiDBLite consensus disorder prediction 171 214 - -
Bva01g00722 351 ProSiteProfiles Zinc finger C2H2 type domain profile. 219 246 IPR013087 -
Bva01g00722 351 SMART c2h2final6 219 241 IPR013087 -
Bva01g00722 351 SMART c2h2final6 278 300 IPR013087 -
Bva01g00722 351 SMART c2h2final6 4 26 IPR013087 -
Bva01g00722 351 MobiDBLite consensus disorder prediction 181 201 - -
Bva01g00722 351 MobiDBLite consensus disorder prediction 100 156 - -
Bva01g00722 351 Pfam C2H2-type zinc finger 277 300 - -
Bva01g00722 351 Pfam C2H2-type zinc finger 4 27 - -
Bva01g00722 351 Pfam C2H2-type zinc finger 218 243 - -
Bva01g00722 351 ProSitePatterns Zinc finger C2H2 type domain signature. 280 300 IPR013087 -
Bva01g00722 351 MobiDBLite consensus disorder prediction 139 156 - -
Bva01g00722 351 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Bva01g00722 351 MobiDBLite consensus disorder prediction 102 138 - -
Bva01g00722 351 Coils Coil 181 201 - -
Bva01g00722 351 SUPERFAMILY beta-beta-alpha zinc fingers 218 300 IPR036236 -
Bva01g00722 351 MobiDBLite consensus disorder prediction 30 71 - -
Bva01g00722 351 ProSiteProfiles Zinc finger C2H2 type domain profile. 278 305 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00722 Bva-Chr1 5264098 5265440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00722 1 333 C2H2 Transcription Factor Family AT3G60580 40.643 1.81e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva01g00722 zf-C2H2_6 8.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00722 - - jre:109015930 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g00722 01 5264098 5265440 Bva01g00722 01 5264098 5265440 ECH
Bva02g01639 02 19104891 19106279 Bva01g00722 01 5264098 5265440 ECH