Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00720 ATGGCTTTGATTGCGGATCAACAACAAAACTTCAAGCACTTCtgtaaaatttgcaaaaaagGTTTTGGGTGTGGGAGAGCTCTAGGAGGACACATGAGGGCTCATGGCATTGGCGACGAAAGTGgccaaatggacgaagatgaTCCGGAGAGTGATTGGGAAGACAAGCTTGGAGGAAACGTTCCTTCAAGCAACAAACGCATGTATGCATTAAGAACAAACCCTAACAGGCTCAAGAGCTGTAGGGTTTGTGAGAATTGTGGTAAGGAGTTCTTATCTTGGAAGTCTTTTCTTGAACATGGAAAGTGCACTTCCGATGATGCTGAATCCCTGGTCTCATCTCCTTGCTCCGACGGAGAAGATGACATTGCCGGTGACCGCACAGGTTGTGGTGGTTGgtccaaaaggaaaagatcaTTTAGAGCCAAAGTGGGTAACTTCAATTCTAATTGTCCATCAAGTGAGGAAGAAGACCTCGCCAACTGTCTGATGATGTTGTCCAACGCCGCTGTTGATCCTCTCATGGCGGAGCCAGAGGAATCTTGTGCCTCAGCTAGCAAAGATGAGGACAGAAGAAACCCCATGAATTTCATTGCACCAATGTCAATTAGGGTTCCCGTAGATAACAAAGCCAAAGGGGTTGCCAAGGGTTTGTTTGAATGCAAAGCATGCAAGAAGGTCTTCAATTCCCACCAAGCATTGGGTGGCCATAGAGCAAGCCACAAGAAGGTTAAGGGTTGCTTCGCCGCCCGGCTCGACAACCTTGACGACAGCGCCGCCGATGATGACGTCATCACATATGTAGAACATGTCCCAATAAAATCAAACACCGCCCTCCAATTTGATCACGGTATTAGTAACAATGCCACATTGGCTTCCTCTTCCAAGAGGAAATCCAAAGTCCACGAATGCTCCATATGTCACCGGATTTTCTCATCGGGCCAAGCTTTGGGAGGACACAAGAGGTGCCATTGGATCACATCAAATGCACCAGACACTTCCACATTGGCTAGATTTCAGCAATTTCAGGGTCACATGGAGCAAAATATGAGTCATCAGATACCTAAGTTTGATAACTCAGAGCCACTTGATCTCAAGCTCGATCTCAACCTTCCAGCACCGGCCGATGACCTAGCCGGAGCCCGGGGGGATGTGGCAACAGAGATTTACATACAGTCATGGGTAGGAACAAAGGACAAAGATACTAATGGTAATGGTAAATATCACAGCCACCGCCATCATCATCGCCATACTCACAAAGAAGACAATGATCACAACATGGACAAGGACAAAAATAATGACAACAGCAAAGCTTCATTGATGCAAAATATTGTGGACGATGAAGCTGACAGTAAGTTAAAGTTAGCAAAACTAAGCGAGCTAAAGGACATCAACATAGGTGGGAGTTCCTCACCATGGTTGCAGGTGGGGATTGGTTCAACAACCGATGTGGGAGCTGACCCATA 1466 0.4509 MALIADQQQNFKHFCKICKKGFGCGRALGGHMRAHGIGDESGQMDEDDPESDWEDKLGGNVPSSNKRMYALRTNPNRLKSCRVCENCGKEFLSWKSFLEHGKCTSDDAESLVSSPCSDGEDDIAGDRTGCGGWSKRKRSFRAKVGNFNSNCPSSEEEDLANCLMMLSNAAVDPLMAEPEESCASASKDEDRRNPMNFIAPMSIRVPVDNKAKGVAKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDNLDDSAADDDVITYVEHVPIKSNTALQFDHGISNNATLASSSKRKSKVHECSICHRIFSSGQALGGHKRCHWITSNAPDTSTLARFQQFQGHMEQNMSHQIPKFDNSEPLDLKLDLNLPAPADDLAGARGDVATEIYIQSWVGTKDKDTNGNGKYHSHRHHHRHTHKEDNDHNMDKDKNNDNSKASLMQNIVDDEADSKLKLAKLSELKDINIGGSSSPWLQVGIGSTTDVGADP 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00720 488 MobiDBLite consensus disorder prediction 420 435 - -
Bva01g00720 488 Pfam C2H2-type zinc finger 301 326 - -
Bva01g00720 488 Pfam C2H2-type zinc finger 13 35 - -
Bva01g00720 488 Pfam C2H2-type zinc finger 219 243 - -
Bva01g00720 488 MobiDBLite consensus disorder prediction 401 436 - -
Bva01g00720 488 SMART c2h2final6 219 241 IPR013087 -
Bva01g00720 488 SMART c2h2final6 13 35 IPR013087 -
Bva01g00720 488 SMART c2h2final6 302 324 IPR013087 -
Bva01g00720 488 Gene3D Classic Zinc Finger 217 324 - -
Bva01g00720 488 ProSitePatterns Zinc finger C2H2 type domain signature. 221 241 IPR013087 -
Bva01g00720 488 Gene3D Classic Zinc Finger 10 103 - -
Bva01g00720 488 ProSiteProfiles Zinc finger C2H2 type domain profile. 302 324 IPR013087 -
Bva01g00720 488 SUPERFAMILY beta-beta-alpha zinc fingers 13 101 IPR036236 -
Bva01g00720 488 SUPERFAMILY beta-beta-alpha zinc fingers 218 324 IPR036236 -
Bva01g00720 488 MobiDBLite consensus disorder prediction 466 488 - -
Bva01g00720 488 MobiDBLite consensus disorder prediction 35 59 - -
Bva01g00720 488 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Bva01g00720 488 PANTHER OS02G0659100 PROTEIN 1 487 - -
Bva01g00720 488 ProSiteProfiles Zinc finger C2H2 type domain profile. 219 246 IPR013087 -
Bva01g00720 488 PANTHER OS02G0659100 PROTEIN 1 487 - -
Bva01g00720 488 ProSitePatterns Zinc finger C2H2 type domain signature. 304 324 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00720 Bva-Chr1 5255722 5257384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00720 135 371 C2H2 Transcription Factor Family AT1G02040 35.537 1.06e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00720 - - tcc:18614376 677.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g00720 01 5255722 5257384 Bva01g00720 01 5255722 5257384 ECH