Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00718 ATGGGTCTTCTTCAATATTCCTCCTATATCTCTTCTCTCGTAGTTCTTTGTTCTCTATTATTAAAACCTTCATGTTCTCTTAACCCCAAATCatctcaaaatgaagaatggAAATCAGCTATCGTTACATGGTATGGAAAAAAAACCGGCGCCGGATCAGATAGGGGTGCTTGTGAATATGGTGCTGTTGTGGAGAATTCTCCACTCAGTAAAATGGTAACAGCAGTGGGCCGTACTCTGTACGATGAGGGAAGAGGATGTGGAGCTTGTTATCAGATGAAATGCACAGAAAATGTTGAATGCTCAGGAAACCCAATTACAGTGGTTACAACTGATGAATGCAAAACCTGTTCAGACAAAGACCATTTTGATCTGAGTGGTACTGCATTTGGTGCTTTGGCAAAACCAGGCAAAGCTGATAATCTTCGCCATGCTGGACGCCTTCAAGTTAAATACACAAGGGTTGCATGCCAGTTTGGTACCAATATAGCCCTTAAAGTGGGTAGTGGGTCCAACCCTTACTATTTCTCTCTGGTAgttgaatatgaaaatgataatagCAACCTTGCAGCAGTTCATCTCAAGCAAGCTCAGCCATCAGACTCATGGGTTTCAATGAAACGGGATCGGGGTGCAGTTTGGATACTGAACTCATCTTCACCCTTACGAGCTCCCTTATCTGTCAAGCTCGCCGAGGCGAGTGGCGAGACTATTGTGGCCGAGAACGTGATTCCGGCGGATTGGAAACCGGGAAATACTTATCATTCTTCAGTCAATTTTAAGAATAGTGTCTG 794 0.4207 MGLLQYSSYISSLVVLCSLLLKPSCSLNPKSSQNEEWKSAIVTWYGKKTGAGSDRGACEYGAVVENSPLSKMVTAVGRTLYDEGRGCGACYQMKCTENVECSGNPITVVTTDECKTCSDKDHFDLSGTAFGALAKPGKADNLRHAGRLQVKYTRVACQFGTNIALKVGSGSNPYYFSLVVEYENDNSNLAAVHLKQAQPSDSWVSMKRDRGAVWILNSSSPLRAPLSVKLAEASGETIVAENVIPADWKPGNTYHSSVNFKNSV 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00718 264 Pfam Expansin C-terminal domain 163 245 IPR007117 -
Bva01g00718 264 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576
Bva01g00718 264 PRINTS Expansin/Lol pI family signature 36 51 IPR007118 GO:0005576
Bva01g00718 264 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Bva01g00718 264 PRINTS Expansin/Lol pI family signature 242 256 IPR007118 GO:0005576
Bva01g00718 264 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576
Bva01g00718 264 PANTHER EXPANSIN-LIKE PROTEIN B1 8 262 - -
Bva01g00718 264 PRINTS Major pollen allergen Lol pI signature 212 229 IPR005795 GO:0005576|GO:0019953
Bva01g00718 264 PRINTS Major pollen allergen Lol pI signature 165 180 IPR005795 GO:0005576|GO:0019953
Bva01g00718 264 PRINTS Major pollen allergen Lol pI signature 181 196 IPR005795 GO:0005576|GO:0019953
Bva01g00718 264 PRINTS Major pollen allergen Lol pI signature 95 105 IPR005795 GO:0005576|GO:0019953
Bva01g00718 264 PRINTS Major pollen allergen Lol pI signature 112 127 IPR005795 GO:0005576|GO:0019953
Bva01g00718 264 PRINTS Major pollen allergen Lol pI signature 134 149 IPR005795 GO:0005576|GO:0019953
Bva01g00718 264 PRINTS Major pollen allergen Lol pI signature 232 249 IPR005795 GO:0005576|GO:0019953
Bva01g00718 264 PANTHER EXPANSIN-B3 8 262 - -
Bva01g00718 264 SMART dpbb_1 73 152 IPR007112 -
Bva01g00718 264 Pfam Lytic transglycolase 75 152 IPR009009 -
Bva01g00718 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 256 IPR007117 -
Bva01g00718 264 SUPERFAMILY Barwin-like endoglucanases 32 159 IPR036908 -
Bva01g00718 264 SUPERFAMILY PHL pollen allergen 162 256 IPR036749 -
Bva01g00718 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 55 162 IPR007112 -
Bva01g00718 264 Gene3D - 159 261 IPR036749 -
Bva01g00718 264 Gene3D - 22 158 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00718 Bva-Chr1 5249703 5251195 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00718 27 260 Expansin Gene Family AT1G65680 50.211 1.89e-80 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00718 - - egr:104444465 276.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g00718 01 5249703 5251195 Bva01g00718 01 5249703 5251195 ECH