Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00714 ATGAGTCAGTGTGTTCCAAGCTGGGATGTCGATGACAATCTCACACTCCCAAGAGTCCCTCTTCGCTCTCACTCCAATTCCACTGCCCCTGATGTTCCCATGTTAGACTATGAAGTTGCAGAGCTAACATGGGAGAATGGGCAAATATCCATGCATGGTTTGGGTGTCCCACAAGTTCCGGCGAAACCCATTACAGCGGCTGCCGGCAATAACACGAGACCATCGGTCTCTACTTCTCCTTCCAAATACTCATGGGAGAAGCCACTTGTTTGTGGCACCTTGGAGTCTATAGTCAACCAAGCTACTTCCTTGCCCAGTCGTCGCAGCAAAACCTTCTTTGACAGTGTCGGCGACGGCGGCGGCGATGGGGACGACCTAGTCCCTTGGATGGACCCGTACAGGGCTGCTGCGGACGCCGCGGCATCGAACACTATGACTATGGACGCCTTGGTGCCGTGCTCGAACCGTACGGACGAACACAGCACACACTCTGCGCCGGGCATTGGCACGTGCATGGTCGGGTCGTCCACTCGTGTTGGATCTTGTAGCGGGCGTACGGGCACCCGGGATGAAGACGCGTCTCTCCTAGCTGCGAAACGCGCTAGGGTGGCGAGTGTGCCGATAGAGCAGCCGCACGAGTGGAGCAGCATGGATCAAAATCAGAGTATGAGCGGTAGTGCTACTTTTGGGAGGGAAAGCCAGCAAATTACTATTGACACGTGTGACAAGGATATTGGTGCGGGGTTCACTTCTACTTCTATGGGTTCGCCGGGAAACACTAGCTCCGCCAAGCAGGGCACGATGAACACCACCGCCGATGACCATGATTCAGTTTGCCACAGCAGACCACAGgGGGACGGTGACGAAGAGGAtcacaaaaagaaaggaacaaGGAAATCTTCGGTGTCCACTAAAAGGAGTAGAGCTGCTGCTATACACAACCAATCCGAAAGGAAAAGGAGAGATAAGATCAACCAGAGGATGAAGACACTGCAGAAGCTGGTCCCAAATTCCAGCAAGACTGATAAAGCTTCAATGCTAGATGAGGTGATTGAATACCTCAAGCAGCTGCAAGCACAAGTGCAAATGATGAGTAGAATGAACATGTCTCCCGTGATGCTGCCGATGACGATGCCACAACAGCTTCAAATGTCAATGATGGCGGCTCCAATGGGCATGGGTTTGGGTATGGGAATGGGCATGGGTATGGGTATGGGCATGGACATGAACACCATGGGCCGCCCTAACATGCCCGGCATGCCTCCTGTCCTCCACCCTTCTGCCTTCATGCCGATGGCTTCGTGGGACGCCTCCGGCGCTGCCGGCGATCGCCTGCAAGGGACTCCAGCCACCATGATGCCTGACCTCTTGTCAACATTTCTTGCATGCCAATCACAGCCCATGACAATGGACGCTTATAATAGGATGGCTGCCATGTACCAGCAGCTGCATCAACCTCCAGCTTCTAGTTCCAAGAACTG 1481 0.5327 MSQCVPSWDVDDNLTLPRVPLRSHSNSTAPDVPMLDYEVAELTWENGQISMHGLGVPQVPAKPITAAAGNNTRPSVSTSPSKYSWEKPLVCGTLESIVNQATSLPSRRSKTFFDSVGDGGGDGDDLVPWMDPYRAAADAAASNTMTMDALVPCSNRTDEHSTHSAPGIGTCMVGSSTRVGSCSGRTGTRDEDASLLAAKRARVASVPIEQPHEWSSMDQNQSMSGSATFGRESQQITIDTCDKDIGAGFTSTSMGSPGNTSSAKQGTMNTTADDHDSVCHSRPQGDGDEEDHKKKGTRKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMMSRMNMSPVMLPMTMPQQLQMSMMAAPMGMGLGMGMGMGMGMGMDMNTMGRPNMPGMPPVLHPSAFMPMASWDASGAAGDRLQGTPATMMPDLLSTFLACQSQPMTMDAYNRMAAMYQQLHQPPASSSKN 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00714 493 MobiDBLite consensus disorder prediction 248 325 - -
Bva01g00714 493 MobiDBLite consensus disorder prediction 275 297 - -
Bva01g00714 493 Pfam Helix-loop-helix DNA-binding domain 313 358 IPR011598 GO:0046983
Bva01g00714 493 SMART finulus 314 363 IPR011598 GO:0046983
Bva01g00714 493 PANTHER TRANSCRIPTION FACTOR UNE10 1 493 - -
Bva01g00714 493 CDD bHLH_AtPIF_like 308 371 - -
Bva01g00714 493 MobiDBLite consensus disorder prediction 212 232 - -
Bva01g00714 493 MobiDBLite consensus disorder prediction 311 325 - -
Bva01g00714 493 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 308 357 IPR011598 GO:0046983
Bva01g00714 493 Coils Coil 314 334 - -
Bva01g00714 493 MobiDBLite consensus disorder prediction 208 232 - -
Bva01g00714 493 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 493 IPR031066 -
Bva01g00714 493 Gene3D - 303 369 IPR036638 GO:0046983
Bva01g00714 493 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 306 371 IPR036638 GO:0046983
Bva01g00714 493 MobiDBLite consensus disorder prediction 248 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00714 Bva-Chr1 5224185 5228281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00714 1 473 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 50.104 1.20e-100 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva01g00714 HLH 7.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00714 - - gmx:100798775 552.747