Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00706 atggaaggaagagagagaaaccaAAGTCCTCACTatcttctctctcctctcaCTGCATGCTCACTCCTTGCACGTTCCCCTGCCCCCTCTTTCCATCAATATATCAGTCTCCTTCTTCCCACCTCCTCCAATCctcttccctctctctctctcttcagCTCAGAGAGCCGAGAACCAGAGATAAGCAGAGAGACCCACACTTCCGAAAGGCCAGTCCCCAATCTTGTACTTGCAAAGTCTCAGTTTATCTCTCTCTCAGAGGAAATGGACATGTACGGTTCACTTTCTACCCCAGACTGCTTCCGCATAGATGACCTTCTCGATTTCTCCAATGATGACTTCGCCGCCGCCaccacctcctcctcctcctcctccaccgGCTCACTGGACTACAAGCAGGACCATCCTCCGCCGCAAAACCCATTTACCCAGTATAACCATTATTCATCCTCGCAACCCTTGTTCGACAATTTCCCTTGCGTCCCCTCCTCCACAGACTTCACCACCAGCCTCTGCGTCCTTAGTGATGACGCAGCCGAGCTCGAATGGCTCTCCCGCTTTGTAGACGACAGCTTCCACGAATTCCCGGAGAATGACACACTCGGCCTCGCTGGTCTCCGACCCGACACGTCGTTTCCTAGCAAGGCTCGCAGCAAACGCTCGAAAGCCCTAGTTTCGTCCCCGTCGAAACCCACAAGAGAGCAAAACGAAGGGTCATCGGCGACGACGGGAGAGGGAGGGGTACGCAGATGCACCCATTGCGCATCAGAGAAAACACCCCAATGGCGAACGGGACCACTGGGACCTAAGACGCTATGCAACGCGTGCGGTGTGAGGTACAAGTCCGGTCGACTTGTACCCGAATACCGACCCGCAGCAAGCCCCACTTTCGTGTTGACTCAGCACTCGAACTCGCACCGGAAGGTGATGGAACTCCGTCGCCAGAAAGAGCTCATGCGGCAACAACAACCAACACAGCAACCAGAGCAATGCTATCATCACTA 1004 0.495 MEGRERNQSPHYLLSPLTACSLLARSPAPSFHQYISLLLPTSSNPLPSLSLFSSESREPEISRETHTSERPVPNLVLAKSQFISLSEEMDMYGSLSTPDCFRIDDLLDFSNDDFAAATTSSSSSSTGSLDYKQDHPPPQNPFTQYNHYSSSQPLFDNFPCVPSSTDFTTSLCVLSDDAAELEWLSRFVDDSFHEFPENDTLGLAGLRPDTSFPSKARSKRSKALVSSPSKPTREQNEGSSATTGEGGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTQHSNSHRKVMELRRQKELMRQQQPTQQPEQCYHH 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00706 334 CDD ZnF_GATA 250 297 IPR000679 GO:0006355|GO:0043565
Bva01g00706 334 ProSiteProfiles GATA-type zinc finger domain profile. 249 281 IPR000679 GO:0006355|GO:0043565
Bva01g00706 334 MobiDBLite consensus disorder prediction 198 249 - -
Bva01g00706 334 Pfam GATA zinc finger 251 284 IPR000679 GO:0006355|GO:0043565
Bva01g00706 334 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 249 309 - -
Bva01g00706 334 MobiDBLite consensus disorder prediction 118 143 - -
Bva01g00706 334 Gene3D - 244 327 IPR013088 GO:0006355|GO:0008270
Bva01g00706 334 ProSitePatterns GATA-type zinc finger domain. 251 276 IPR000679 GO:0006355|GO:0043565
Bva01g00706 334 SMART GATA_3 245 295 IPR000679 GO:0006355|GO:0043565
Bva01g00706 334 MobiDBLite consensus disorder prediction 220 246 - -
Bva01g00706 334 PANTHER GATA TRANSCRIPTION FACTOR 2 90 327 - -
Bva01g00706 334 PANTHER GATA TRANSCRIPTION FACTOR 90 327 - -
Bva01g00706 334 MobiDBLite consensus disorder prediction 50 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00706 Bva-Chr1 5121271 5122540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00706 89 326 C2C2-Gata Transcription Factor Family AT2G45050 55.109 3.11e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bva01g00706 GATA 2.4e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00706 - - crb:17890444 271.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g00706 01 5121271 5122540 Bva01g00706 01 5121271 5122540 ECH