Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00700 atggagagggagagagagagaatggatTTTGGAGGGAACATGTTCTGTCTTGGCAACGTTAGTAGAGAGCAAAACGGTGGCAGTAACAACGTTAattttgcttgggattcgtgGGAACCTACTAGTAATTCCGTTAATTCTAGGCTTGTTAATGCATTCTACACTACCACCGCCGCCACGGCGGCGGAGACCACCGGCCCTGCCACTCGCCAGGAGGCGAGTCTAGAAAACGCACTCATGTTCCTTCCTCAAGCTAATCATAAAGACTGTGCTCACCcccaacagcagcagcagcagacGCTGTACTCTGCCGCAGAGGGGTCCCACGTGCACCCGGACCCACATCTGATGTGCTTGAAGCTAGGGAAGAGGCATTATTTTGAGGACGCTAATGCCCCTCATGCGGGTGGCAACggtggaggtggaggtggGTTACCTTTGGCGGGAAAGAGGGGGAAAGCTTATTACGGAAGTGGTGGCAGCGGCGGTGGCGGAGGCAGCGGCGTTCTAAAGACGGCTTCGTTCGCGAATGCAGCTGTTCCGAAATGTCAGGTGGAGGGGTGCCACGTGGCGCTGTTGAACGCGAAGGACTACCACCGGAGGCACAAGGTGTGTGAGATGCATTCGAAAGCACCTAAAGTGGTGGTGTTAGGGTTAGAGCAGAGGTTCTGCCAGCAGTGTAGCAGGTTCCACGTGATTTCAGAATTCGATGATTCAAAGAGGAGTTGTAGGAGGAGACTGGCAGGCCATAATGAGCGAAGAAGAAAGAGCTCCCATGAATCTGTTGCTAGGAATACTTTTCAAGCAGGGTGTGTTCGCTCTCTTCTGTCATCAAAGAATGATTCATGGCTTTCTCCTGCTGATCTTTCCTCAAGATGCAGTGCTGCACTTCGCGAATTGATGGCAGAAAACCGTGCAGCCATCATGGCTCGGCAGCTCAATTCAGATAGAGACTGGCATCTACACCACAGTACTGCCATGGAAGAACTTAAGGAACCGATCCAGTTGCACGAGTCCAATTATTTCCCACAGCACATGTTTCCATATAACTGGCATGCAAATTA 1064 0.4727 MERERERMDFGGNMFCLGNVSREQNGGSNNVNFAWDSWEPTSNSVNSRLVNAFYTTTAATAAETTGPATRQEASLENALMFLPQANHKDCAHPQQQQQQTLYSAAEGSHVHPDPHLMCLKLGKRHYFEDANAPHAGGNGGGGGGLPLAGKRGKAYYGSGGSGGGGGSGVLKTASFANAAVPKCQVEGCHVALLNAKDYHRRHKVCEMHSKAPKVVVLGLEQRFCQQCSRFHVISEFDDSKRSCRRRLAGHNERRRKSSHESVARNTFQGCVRSLLSSKNDSWLSPADLSSRCSAALRELMAENRAAIMARQLNSDRDWHLHHSTAMEELKEPIQLHESNYFPQHMFPYNWHAN 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00700 353 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 29 344 - -
Bva01g00700 353 Gene3D - 174 244 IPR036893 GO:0003677|GO:0005634
Bva01g00700 353 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 29 344 IPR044817 GO:0003677
Bva01g00700 353 ProSiteProfiles Zinc finger SBP-type profile. 180 257 IPR004333 GO:0003677
Bva01g00700 353 Pfam SBP domain 183 256 IPR004333 GO:0003677
Bva01g00700 353 SUPERFAMILY SBT domain 181 261 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00700 Bva-Chr1 5078676 5081041 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00700 117 256 SBP-box Gene Family AT1G27370 45.333 1.39e-35 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Bva01g00700 SBP 8.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00700 - - gmx:100806582 404.445