Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00684 ATGGGGAGCATGTCTGAGCCAGACAGAAAACGGCGTCACTATAACTCCTTGTCTCCTACTGCTGCAGCTGCTACTACGAAGAAGCTACCCTTCTTGCCCATTTCTGAAGACAAAAAGCTTGATATTGCTGTGCTTcagtttcaaaatcaaaagcttACACAGAAATTAGAAACTCAGAAGGTAGAACGTACTGCACTTGAGAATAAATTTTCTCAAGTGAAGGAGAAGCAACAGCCTTATGATTCCACATTAACATTGGCCAAGAAGTCTTGGGAACAGCTGGTCAATGATTTGGAGTCATGTTCTATTGGCACAAGGGAGTCTAGCGGAAAATTGGATTCCAAGTTTACATCAGTCATGGGAGTTGGTAGTCCATCCACTGTTGAGGATGTTTTTCTTAGTCGACTTCTTCAAACTGGTGCAACTGAGAGTTCCTCAACATTGATTTGTGCTGATCAGATGGAAGACCAAAGAGAAACtactattgaaaaaattaagagcattttaaataatacagTGACAGCTATCAACAATCTTTGGTGTCAGAAGGATGCTTTGCATGATACAGTACTAGAATATTTTCCAGACGATGGTTCATGCAGGCAGGAGTCCTCTATTGGTTTGCTGGAAGAAATTAGAACCTTGAGATCTACGTTCAGTGAACTTCATTTGAAGCACAAGTCTTTGATGTGTGAGTTTCAAAGTCATCGGGATCTTGATGCCAAAACCAAATTGGagcttaaaatattaaaagGGGAATTAGAAAGCACTGTGGCGGAATTAGAAGAAAGTAATCATAAATTGGCAACTCTTAAGGCGGAGAGAGATACGGCAAAAGGTGGAATTTTCCCAGTTTTAAATGTGGGAAATAAGCATGTTGCAAGTGATAAGATTAGAGACAAGCAAAAGGATCTGCAAGACTTGGAGTTTTCGCTGAAAGAGCTAATGGACCAAGGTATGTCTCGACTAGGAGAGCTGAAAAGATTTCATGAGGAGAGGATAAGAATATTACAGCAGTTATGTGATTTGCAGAATACagtgaagaatttgaaatgtatTATCTCTTCTGAATCGTTCCAATTGGTGAGAGATCAAATAGAAAAGTCAAAATCAGAACTTCTCAAGTATGAGGCCTTATTTGAGAAACTACAGGTTGAGAAGGAAAATCTTTCATGGAAGGAGAGGGACTTGTacataaaaagtgatttaGTAGATGTTGTTCAAAGATCTGCAGCAGTTGCTGATTCTAGAGTGGCTGATTTAGagattaaaattcaaaaaataattgaagaaggAAATGAGATTGAGAAGAGGTTGGAAGAGGCAGCAAGAGAACCAGGGAGGAAACAAATCATTACAGAATTTAAATCCCTGGTGTCTTCGTTTCCTGAGGAAATGGGATCtatgcaaaatcaattaaggaagTACAAAGAGGCAGCTTCAGATATCCATTCTCTGCGTGCAGATGTGCAGTCTCTTTCTACTATTCTTGATCGAAAGGTAAAAGAATGTGAGATGTCAGCTGTTCTGTCTGCTGATCAACTTGCTGATATACAGATGCTGAATGCTGTGGTCCAGAATTTGAGAGAAAGTGAGGAAGAGTTGAAGTTGATTGTGGAAATGTATAAGCGTGAGTCCATTGATTCAAGGGAAGTTTCAGAAGCACGGGATTCTGAATACAGAGCATGGGCACGTGTTCAAAGTTTGAAATCTTCCCTTGATGAGCACAATTTGGAACTTCGAGTTAAAACAGCAAATGAAGCAGAGGCCAGATCTCAACAGAGGCTGGCTGCTGCTGAAGCTGAGATAGCAGACCTGAGACAGAAATTAGAAGCTTCTAAAAGggAGATGTGCAAATTGTCTGATGtcttaagattaaaaaatgaagcaaatgaGGCCTACCTATCTGAAATAGAGACTATTGGACAAGCATATGATGATAtgcaaaatcaaaaccaaCATATGTTGCAGCAGATTACCGAGGGAGATGACTACAATATTAGGCTTCTCTTAGAGGGTGTAAGATCTAAACAGAAGCAGGATGCTCTGCTGTTGGAGAAGCAGACGTTAGAACGAGAGATCCAGCAACAAAATGcatctctaattttttatgaaatgaaaGCTGCAAGAGTTGAAGATCAGGTTAAATTCTGTTCAGATCAGGTTCAGAGAATTGTTGAGAATAAGTTTCAAACTTCTGTCACTTTGGAAAATACACAACGAAGGTTGCTGGATGTTCAAAGGGCATCTCAGCAAGCTAGAGACACAGTGGAGGAAGTTCAATCTAAAGCCTCTAGTAGTCGAGTAACTCGTATGGAGTTACAAGTAGAACTTGAGAAAGAAAGGTTTGCTAAGAAAAGGATACAGGAGCAGGTGGAGGCTGCCAGGGGTAAGGTTGCAGCTCTTCGGGCAAAAAGTGAGGGCTGCTCCGTTACTCAAAAGCTTCGACAGGAACTGGGAGAATACAAGGAAATTGTCAAGTGCAGTATCTGTCAGGGCAGGACAAAAGagGTGGTAATCACAAAATGCTACCATTTGTTTTGCTACTCTTGCATCCAAAAAGTTATCCAGAGCAGGCAGCGCAAGTGTCCACAGTGCTCTGCAAGTTTTGGGCCAAACGATGTTAAACCCGTTTATCTGTA 2642 0.3827 MGSMSEPDRKRRHYNSLSPTAAAATTKKLPFLPISEDKKLDIAVLQFQNQKLTQKLETQKVERTALENKFSQVKEKQQPYDSTLTLAKKSWEQLVNDLESCSIGTRESSGKLDSKFTSVMGVGSPSTVEDVFLSRLLQTGATESSSTLICADQMEDQRETTIEKIKSILNNTVTAINNLWCQKDALHDTVLEYFPDDGSCRQESSIGLLEEIRTLRSTFSELHLKHKSLMCEFQSHRDLDAKTKLELKILKGELESTVAELEESNHKLATLKAERDTAKGGIFPVLNVGNKHVASDKIRDKQKDLQDLEFSLKELMDQGMSRLGELKRFHEERIRILQQLCDLQNTVKNLKCIISSESFQLVRDQIEKSKSELLKYEALFEKLQVEKENLSWKERDLYIKSDLVDVVQRSAAVADSRVADLEIKIQKIIEEGNEIEKRLEEAAREPGRKQIITEFKSLVSSFPEEMGSMQNQLRKYKEAASDIHSLRADVQSLSTILDRKVKECEMSAVLSADQLADIQMLNAVVQNLRESEEELKLIVEMYKRESIDSREVSEARDSEYRAWARVQSLKSSLDEHNLELRVKTANEAEARSQQRLAAAEAEIADLRQKLEASKREMCKLSDVLRLKNEANEAYLSEIETIGQAYDDMQNQNQHMLQQITEGDDYNIRLLLEGVRSKQKQDALLLEKQTLEREIQQQNASLIFYEMKAARVEDQVKFCSDQVQRIVENKFQTSVTLENTQRRLLDVQRASQQARDTVEEVQSKASSSRVTRMELQVELEKERFAKKRIQEQVEAARGKVAALRAKSEGCSVTQKLRQELGEYKEIVKCSICQGRTKEVVITKCYHLFCYSCIQKVIQSRQRKCPQCSASFGPNDVKPVYL 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00684 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 809 880 IPR013083 -
Bva01g00684 880 Coils Coil 680 707 - -
Bva01g00684 880 ProSitePatterns Zinc finger RING-type signature. 843 852 IPR017907 -
Bva01g00684 880 SMART ring_2 828 866 IPR001841 -
Bva01g00684 880 Coils Coil 771 805 - -
Bva01g00684 880 Coils Coil 582 616 - -
Bva01g00684 880 MobiDBLite consensus disorder prediction 1 15 - -
Bva01g00684 880 Coils Coil 525 545 - -
Bva01g00684 880 Coils Coil 151 171 - -
Bva01g00684 880 Coils Coil 42 76 - -
Bva01g00684 880 Coils Coil 736 756 - -
Bva01g00684 880 Coils Coil 366 386 - -
Bva01g00684 880 Coils Coil 298 318 - -
Bva01g00684 880 Coils Coil 469 489 - -
Bva01g00684 880 CDD RING-HC_BRE1_like 826 867 - -
Bva01g00684 880 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1-LIKE 1 1 880 - -
Bva01g00684 880 Coils Coil 244 274 - -
Bva01g00684 880 Pfam Zinc finger, C3HC4 type (RING finger) 828 866 IPR018957 GO:0046872
Bva01g00684 880 Coils Coil 411 445 - -
Bva01g00684 880 MobiDBLite consensus disorder prediction 1 21 - -
Bva01g00684 880 SUPERFAMILY RING/U-box 820 879 - -
Bva01g00684 880 PANTHER RING FINGER PROTEIN-RELATED 1 880 IPR013956 GO:0004842|GO:0010390
Bva01g00684 880 ProSiteProfiles Zinc finger RING-type profile. 828 867 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00684 Bva-Chr1 4990914 4999855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00684 815 879 C3H Transcription Factor Family AT2G42030 31.818 3.56e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00684 K10696 - gmx:100790744 1199.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g00684 01 4990914 4999855 Bva01g00684 01 4990914 4999855 ECH