Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00678 ATGAGTGGAAGATGGATGCGTGTTAAGAAGGATGAAGAGTCTATCAGGAAAGGGCCATGGAAAGCAGAGGAAGATGAGATTCTCATAAAACATGTCAACAAGTATGGTCCCAGAGATTGGAGCTCCATTCGATCCAAAGGCCTTCTTCAAAGGACTGGCAAATCTTGCCGTCTTCGTTGGGTCAATAAGCTCAGGCCAAATCTCAAGAAtGGGTGCAAGTTTTCATTGGAGGAAGAGAGGGTGGTGATAGAGTTGCAGGCAGAATTTGGGAACAAATGGGCTAGGATTGCGTCATACTTGCCGGGGAGGACAGACAATGATGTGAAGAATTTCTGGAGTAGCAGGCAGAAGAGGCTGGCTCGGATTCTGCAGACATCAGCAACATCCTCAAAATCCCAGAAGAACAAGACTAAAGCTGCCACTTTTCATGATGTTCCTATGTTGGAGGCTCCCAAGTTCAGTTCTTCATCAGAGGGAGAATCATCACCGAAGGCACAGCCATGGTCACCAGCAGCCTGCATTGAGAATCCTGAGGAGATCAAAATGGTGGATTTACCAGATCTTATCAACTCCAGCATGCTCGGTTCTGACACAAACGTAGTTAAAGAGTTCACTCATACCCCTATTGGTGATAGCTATGTGACAGCAGACACAAGCTCAAAGATTATTTTCCCTCAGTTTCCACAACCGGAGACAGATTTCACATTCTCAATGGAAAAGCAAGACATCATAGGCAGAAGTGACGAGACAAATTTCTATGATGTCTTTGGCCCTCTGGATCAACAAGAACTCCAAATAGGATCAGAGTTTCCCTTTGAGCTCTCTTCCTTTGAACCATTAGGGAGCTGCGGATTGGTGACGAGGGATGTGATTGGTAATCCGGCAAAACCCGAGAGCTTCTTCGATGACTTCCCAGCAGACATGTTTGATGACATGGAACTTCCTCTGCCTCCTCCAATCCCACCGGATCCTTG 974 0.4641 MSGRWMRVKKDEESIRKGPWKAEEDEILIKHVNKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERVVIELQAEFGNKWARIASYLPGRTDNDVKNFWSSRQKRLARILQTSATSSKSQKNKTKAATFHDVPMLEAPKFSSSSEGESSPKAQPWSPAACIENPEEIKMVDLPDLINSSMLGSDTNVVKEFTHTPIGDSYVTADTSSKIIFPQFPQPETDFTFSMEKQDIIGRSDETNFYDVFGPLDQQELQIGSEFPFELSSFEPLGSCGLVTRDVIGNPAKPESFFDDFPADMFDDMELPLPPPIPPDP 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00678 324 Gene3D - 72 144 - -
Bva01g00678 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 120 IPR017930 -
Bva01g00678 324 PANTHER TRANSCRIPTION FACTOR DUO1 9 319 - -
Bva01g00678 324 Gene3D - 7 70 - -
Bva01g00678 324 ProSiteProfiles Myb-like domain profile. 73 116 IPR001005 -
Bva01g00678 324 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Bva01g00678 324 Pfam Myb-like DNA-binding domain 20 79 - -
Bva01g00678 324 CDD SANT 19 64 IPR001005 -
Bva01g00678 324 CDD SANT 73 112 IPR001005 -
Bva01g00678 324 SUPERFAMILY Homeodomain-like 15 112 IPR009057 -
Bva01g00678 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 68 IPR017930 -
Bva01g00678 324 MobiDBLite consensus disorder prediction 151 170 - -
Bva01g00678 324 SMART sant 70 118 IPR001005 -
Bva01g00678 324 SMART sant 16 66 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00678 Bva-Chr1 4926727 4928536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00678 4 319 MYB Transcription Factor Family AT3G60460 47.273 1.26e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva01g00678 Myb_DNA-bind_6 2.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00678 K09422 - qsu:112039124 371.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g00678 01 4926727 4928536 Bva01g00678 01 4926727 4928536 ECH