Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00668 ATGGGGGAGAAAGATGCTGGGTTAGGATTGGGGTTGAGTTTGAGCTTGGGCTCAGTCCCTCCATTGAAGGTTAATCTCATGCAGAAGCCTCCTCAATCTGTTTCCAATCAGAAGAGTTCATGGAATGATTTGTTTCAGCTACCTGATCGCAACTCCGAAACGAGGTCGTTTCTCCGGGGAATAGATATGAATTTAGCACCGTCGACTACGGTGGTGGTGGATTGTGACGACGACAACGGTGTTTCGTCGCCGAACAGCACGGTGTCGAGTATCAGCGGGAAACGGTGcgagagagaaggaaatggGGACGAAAATGACGCCGAGAGGGCTTCGTGCTCCCGAGGCAGCGACGACGAGGAGGGCGCCGGCGGCGACAACTCAAGGAAGAAGCTCAGGCTCTCAAAGGAGCAAGCCGTGGTTCTGGAGGAGACCTTCAAGGAGCACAACACTCTCAATCCGaagCAAAAGCAAGCATTGGCAAAGCAGCTGAATCTGAGGGCTAGACAAGTGGAGGTGTGGTTTCAGAACAGAAGAGCAAGGACCAAGTTGAAGCAAACTGAGGTGGACTGTGAATACTTGAAGAGATGCTGCGAGAATCTGACTGAGGAGAATAGGAAGCTGCAAAAGGAGGTCCAAGAGCTTAGGGCATTGAAACTATCCCCACAGCTCTACATGCACATGAACCCTCCCACCACCCTCACCATGTGCCCTTCATGCGAGCGGGTAGCCGTCTCATCCGCCTCCTCCTCCTCATCGGCGGCCGTGCCTGCCCCGCCCAACCGCAACCCGCTGGGTCCTACCATTCAGCGGCCGGTGCCCATCAACCCTTGGGCCGCCATGTCAATCCAACACCGACCATTTGACGGCCCGGCACCGGCACCGACTTCTCGGCCATA 896 0.5413 MGEKDAGLGLGLSLSLGSVPPLKVNLMQKPPQSVSNQKSSWNDLFQLPDRNSETRSFLRGIDMNLAPSTTVVVDCDDDNGVSSPNSTVSSISGKRCEREGNGDENDAERASCSRGSDDEEGAGGDNSRKKLRLSKEQAVVLEETFKEHNTLNPKQKQALAKQLNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRKLQKEVQELRALKLSPQLYMHMNPPTTLTMCPSCERVAVSSASSSSSAAVPAPPNRNPLGPTIQRPVPINPWAAMSIQHRPFDGPAPAPTSRP 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00668 298 Coils Coil 190 220 - -
Bva01g00668 298 SMART halz 184 227 IPR003106 GO:0006355|GO:0043565
Bva01g00668 298 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 4 284 - -
Bva01g00668 298 ProSiteProfiles 'Homeobox' domain profile. 124 184 IPR001356 GO:0003677
Bva01g00668 298 Pfam Homeobox associated leucine zipper 184 218 IPR003106 GO:0006355|GO:0043565
Bva01g00668 298 SUPERFAMILY Homeodomain-like 116 185 IPR009057 -
Bva01g00668 298 ProSitePatterns 'Homeobox' domain signature. 159 182 IPR017970 GO:0000981|GO:0006355
Bva01g00668 298 Pfam HD-ZIP protein N terminus 1 99 IPR006712 GO:0005634
Bva01g00668 298 SMART HOX_1 126 188 IPR001356 GO:0003677
Bva01g00668 298 PANTHER - 4 284 - -
Bva01g00668 298 CDD homeodomain 128 185 IPR001356 GO:0003677
Bva01g00668 298 MobiDBLite consensus disorder prediction 96 131 - -
Bva01g00668 298 Gene3D - 132 182 - -
Bva01g00668 298 MobiDBLite consensus disorder prediction 76 94 - -
Bva01g00668 298 MobiDBLite consensus disorder prediction 76 131 - -
Bva01g00668 298 Pfam Homeodomain 128 182 IPR001356 GO:0003677
Bva01g00668 298 MobiDBLite consensus disorder prediction 250 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00668 Bva-Chr1 4862294 4865272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00668 31 289 Homeobox Transcription Factor Family AT3G60390 67.273 1.01e-110 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bva01g00668 HD-ZIP_N 7.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00668 K09338 - pvy:116146403 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g00511 02 6441540 6444896 Bva01g00668 01 4862294 4865272 BWGD
Bva01g00668 01 4862294 4865272 Bva01g00668 01 4862294 4865272 ECH