Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00662 ATGAGTCGGAGAGTGAGAAGGAAGGTCgcaaggaaagggaaagggaagTTAGTGTTGCCCAATTACCCCGACATTCAAGATGAGGTTTTGGAGTTGGACGAAAAAGGGGTTGTTGATTGGAGGAGCTTACCTGATGATACAGTAATTCAGCTGTTTTCATGTTTAAGCTATCGTGACCGAGCAAGCTTATCATCAACTTGTAAGACATGGAGGTTGCTTGGTAGTTCTCCATGTTTATGGAACTCTCTTGATCTTCGTTCCCACAGGTTTGATGCTTCCATGGCATCTTCACTTGCTCCCAGGTGTGTGAATCTTCAAAGGCTTAGATTTCGTGGGGCAGAGTCTGCTGATGCAATAATACACCTTCAAGCTAGGAATTTGCGTGAAATAAGTGGAGACTATTGCAGGAAGATTACTGATGCAACTCTTGCCGTGATTGTAGCTCGGCATGAGGCACTTGAGAGTCTTCAGCTTGGGCCAGATTTCTGTGAGAGAATCAGTAGTGATGCTATAAAAGCAATAGCACATTGCTGTCCTAGACTAAAGAAACTTCGACTCTCTGGTATTAGGGATGTAAATGGCGATGCCATCAATGCCTTGGCTAAGCATTGTCCAAACTTAACTGATATTGGATTCATTGACTGTCTCAATGTTGATGAGCTTGCATTGGGAAATGTTTTATCAGTTCGTTTCCTTTCTGTTGCGGGTACATCAAGCATAAAGTGGGGTGTGGTTTCCCATCTTTGGCATAAACTGCCAAACCTGGTTGGGGTAGATGTTTCAAGAACTGATATTGGTCCATCTGCTGTTTCGAGATTATTATCCTCATCACAGAACTTGAAGGTTTTGTGTGCACTGAATTGTCCTATCCTTGAAGAGGATACCAGCTTTGCtgcaagtaaatataaaaataagttactGATTGCCCTTTTTACTGATATTTTCAAAGGATTagcttctttatattttgatgatacaaagaaaggaaagagtgTGTTTTTAGAATGGAGGAATTCAAAGAAGAATGATAAGGACTTAAATGAAATCATGATATGGCTTGAGTGGATCCTATCCCACACACTTTTGCGGTCTGCTGAGAGCTCTCAGCAGGGACTTGATAGTTTCTGGGTTAAACAAGGTGGAGCTCTCTTGCTCAGTCTAATGCAAAGTTCTCAAGAGGATGTTCAAGAGAGAGCTGCCACGGGACTTGCAACTTTTGTTGtaattgatgatgaaaatgctAGCATAGATTGTGGAAGGGCTGAAGCAGTTATGAGAGATGGTGGCATACGCCTCCTCCTGGACTTGGCCAAATCCTGGAGGGAGGGGCTTCAGTCTGAGGCAGCTAAGGCCATTGCAAATTTGTCTGTCAATGCCAATGTTGCCAAAGCTGTTGCAGAAGAGGGTGGGATCGATATTCTTGCTGGTTTGGCTAGGTCCATGAACAAACTAGTAGCTGAAGAGGCTGCTGGAGGATTGTGGAATCTCTCTGTCGGAGAAGAACACAAAGGTGCCATTGCTGAGGCTGGAGGAATGCAAGCTTTGGTAGATCTCATATTCAAGTGGTCCTCTAATGGAGATGGAGTTTTGGAACGTGCAGCTGGTGCATTGGCAAATTTAGCTGCTGATGACAAGTGTAGTACAGAGGTggcattgtcaggtggggtgCATGCCTTAGTGATGCTTGCTCGTAACTGCAAGTTTGAGGGGGTACAGGAGCAGGCTGCTCGTGCATTGGCCAATTTGGCTGCTCATGGAGATAGCAACAGTAATAATGCAGCTGTTGGACAAGAAGCAGGTGCTCTTGAGGCACTTGTTCAGCTCACCCGTTCTCCCCATGAGGGTGTCAGGCAAGAGGCTGCTGGTGCACTCTGGAATTTATCGTTTGATGATAGAAATCGAGAAGCAATTGCAGCAGCTGGTGGAGTTCAGGCCTTGGTTGCTCTTGCCCAGTCTTGCTCTGGTGCCTCCCCTGGCCTTCAAGAGAGGGCTGCTGGTGCTCTCTGGGGATTGTCAGTTTCTGAAGCCAACAGCATTGCAATTGGGCGAGAAGGAGGTGTTGCACCTCTAATAGCACTGGCGCGGTCTGAAGCTgagGATGTTCATGAAACAGCTGCAGGAGCACTCTGGAATCTTGCTTTTAATCCTGGTAATGCTCTACGCATAGTGGAGGAAGGAGGAGATCTTGTATTAGTGGGTCTCTGTTCCTCATCAGTATCAAAAATGGCACGTTTCATGGCCGCATTGGCATTGGCTTACATGTTTGATGGGAGAATGGATGAATTTGCTTTAGTAGGCACCTCATCAGAAAGTATTTCTAAGAGCGGGAGCTTGGATGGAGCTAGAAGGATAGCTTTGAAACACATTGAAGCTTTTGTTCTTAAGTTTTCTGCCCCACAAGcatttgctgctgctgctgcatcATCAGCACCTGCAGCACTGGCCCAAGTTACCGAAGGTGCTCGTATCCAAGAAGCGGGACATCTGAGATGCagCGGTGCTGAAATTGGGAGATTTGTTGCCATGCTACGAAACCCATCGTCTATACTCAAAGCTTGCGCTGCATTTGCTCTTCTCCAGTTCACAATTCCTGGTGGACGACATGCTATGCACCATGCTAGCCTCATGCAGAATGCAGGAGCAGCAAGGGTTCTCCGGGGAGCGGCTGCCTCAGCAATTGCACCGCTAGAAGCCAAAATCTTTGCCAGAATTGTTCTTCGTAATCTTGAGCACCACCAGATAGATCAAACAATCTA 2756 0.4387 MSRRVRRKVARKGKGKLVLPNYPDIQDEVLELDEKGVVDWRSLPDDTVIQLFSCLSYRDRASLSSTCKTWRLLGSSPCLWNSLDLRSHRFDASMASSLAPRCVNLQRLRFRGAESADAIIHLQARNLREISGDYCRKITDATLAVIVARHEALESLQLGPDFCERISSDAIKAIAHCCPRLKKLRLSGIRDVNGDAINALAKHCPNLTDIGFIDCLNVDELALGNVLSVRFLSVAGTSSIKWGVVSHLWHKLPNLVGVDVSRTDIGPSAVSRLLSSSQNLKVLCALNCPILEEDTSFAASKYKNKLLIALFTDIFKGLASLYFDDTKKGKSVFLEWRNSKKNDKDLNEIMIWLEWILSHTLLRSAESSQQGLDSFWVKQGGALLLSLMQSSQEDVQERAATGLATFVVIDDENASIDCGRAEAVMRDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNANVAKAVAEEGGIDILAGLARSMNKLVAEEAAGGLWNLSVGEEHKGAIAEAGGMQALVDLIFKWSSNGDGVLERAAGALANLAADDKCSTEVALSGGVHALVMLARNCKFEGVQEQAARALANLAAHGDSNSNNAAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVQALVALAQSCSGASPGLQERAAGALWGLSVSEANSIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGDLVLVGLCSSSVSKMARFMAALALAYMFDGRMDEFALVGTSSESISKSGSLDGARRIALKHIEAFVLKFSAPQAFAAAAASSAPAALAQVTEGARIQEAGHLRCSGAEIGRFVAMLRNPSSILKACAAFALLQFTIPGGRHAMHHASLMQNAGAARVLRGAAASAIAPLEAKIFARIVLRNLEHHQIDQTI 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00662 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 685 727 IPR000225 GO:0005515
Bva01g00662 918 Pfam Armadillo/beta-catenin-like repeat 630 672 IPR000225 GO:0005515
Bva01g00662 918 Pfam Armadillo/beta-catenin-like repeat 592 628 IPR000225 GO:0005515
Bva01g00662 918 Pfam Armadillo/beta-catenin-like repeat 500 542 IPR000225 GO:0005515
Bva01g00662 918 Pfam Armadillo/beta-catenin-like repeat 553 584 IPR000225 GO:0005515
Bva01g00662 918 Pfam Armadillo/beta-catenin-like repeat 422 456 IPR000225 GO:0005515
Bva01g00662 918 Pfam Armadillo/beta-catenin-like repeat 676 713 IPR000225 GO:0005515
Bva01g00662 918 Pfam Armadillo/beta-catenin-like repeat 463 497 IPR000225 GO:0005515
Bva01g00662 918 Gene3D - 678 765 IPR011989 -
Bva01g00662 918 Gene3D - 590 677 IPR011989 -
Bva01g00662 918 PANTHER PROTEIN ARABIDILLO 1-LIKE 1 913 - -
Bva01g00662 918 ProSiteProfiles F-box domain profile. 37 83 IPR001810 GO:0005515
Bva01g00662 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 600 642 IPR000225 GO:0005515
Bva01g00662 918 PANTHER PROTEIN ARABIDILLO 1 1 913 IPR044583 -
Bva01g00662 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 510 555 IPR000225 GO:0005515
Bva01g00662 918 Gene3D - 524 589 IPR011989 -
Bva01g00662 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 554 585 IPR000225 GO:0005515
Bva01g00662 918 Pfam F-box-like 40 86 IPR001810 GO:0005515
Bva01g00662 918 SMART LRR_CC_2 178 203 IPR006553 -
Bva01g00662 918 SMART LRR_CC_2 124 149 IPR006553 -
Bva01g00662 918 SMART LRR_CC_2 204 229 IPR006553 -
Bva01g00662 918 SMART LRR_CC_2 150 177 IPR006553 -
Bva01g00662 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 469 511 IPR000225 GO:0005515
Bva01g00662 918 SMART arm_5 417 457 IPR000225 GO:0005515
Bva01g00662 918 SMART arm_5 589 629 IPR000225 GO:0005515
Bva01g00662 918 SMART arm_5 458 498 IPR000225 GO:0005515
Bva01g00662 918 SMART arm_5 674 714 IPR000225 GO:0005515
Bva01g00662 918 SMART arm_5 543 584 IPR000225 GO:0005515
Bva01g00662 918 SMART arm_5 630 673 IPR000225 GO:0005515
Bva01g00662 918 SMART arm_5 499 542 IPR000225 GO:0005515
Bva01g00662 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 428 470 IPR000225 GO:0005515
Bva01g00662 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 641 686 IPR000225 GO:0005515
Bva01g00662 918 Gene3D Ribonuclease Inhibitor 33 311 IPR032675 -
Bva01g00662 918 Gene3D - 382 523 IPR011989 -
Bva01g00662 918 SUPERFAMILY RNI-like 43 293 - -
Bva01g00662 918 SMART fbox_2 43 83 IPR001810 GO:0005515
Bva01g00662 918 SUPERFAMILY ARM repeat 383 745 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00662 Bva-Chr1 4826242 4836956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00662 571 758 U-box Gene Family AT2G23140 34.392 9.97e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00662 - - gmx:100819086 1536.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g00662 01 4826242 4836956 Bva01g00662 01 4826242 4836956 ECH