Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00652 ATGATTAGTAACCTTGACTCTGATACTGATGCTCTTTTGGAGTCAATCCAACACTATCTGCTTGAAAATGATTCTACTGTTGCCATGGATATTTTGGAATCAAATCTTGCTAATGATCCATTTCGTCACCTCAGTAGTTCAGGCTTTGGTTTCTCCGATCACACTGTCACTGCCCCTCTTGGAGCAGAGGGAGCGGTGACCAGTACTGAATCAAAGGGAGGGAAAAGAGCAGGTGCGGTGGCGCGTGAAATACACAAGCCTCCGGTATCATGGAAGCATTATAAAGGGGTGAGGCGTAGGCCATGGGGGAAATTTGCGGCGGAGATCagagacccaaaaaaaaacgGCGCCAGAAGATGGCTTGGGACTTACGAGACGGAGGAGGATGCGGCTCTGGCTTATGATAGAGCCGCTTTCGAGATGCGCGGCTCAAAAGCAAAGTTGAATTTTTCGCACTTAATCGGCTCGGATACACTGCCTGAGCCAGTGAGAGTAGCGATGGGCAAACGTCGTCGATCGACAGAGCCTTGTTCGCCGACGTCTACGGCGGAGGATGTTACAGAGGAGCCAAAGAGGAGGAATAACCGAGCTGgcctattaaataaaatagccACTCAAAAGAGCCTAGTGCAGGAGAGATTCTCATTTACTCTTGATAGAGCGTTGTTTTATTA 674 0.4644 MISNLDSDTDALLESIQHYLLENDSTVAMDILESNLANDPFRHLSSSGFGFSDHTVTAPLGAEGAVTSTESKGGKRAGAVAREIHKPPVSWKHYKGVRRRPWGKFAAEIRDPKKNGARRWLGTYETEEDAALAYDRAAFEMRGSKAKLNFSHLIGSDTLPEPVRVAMGKRRRSTEPCSPTSTAEDVTEEPKRRNNRAGLLNKIATQKSLVQERFSFTLDRALFY 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00652 224 ProSiteProfiles AP2/ERF domain profile. 93 151 IPR001471 GO:0003700|GO:0006355
Bva01g00652 224 PANTHER DNA-BINDING DOMAIN 1 209 IPR044808 GO:0003700|GO:0009873
Bva01g00652 224 PRINTS Ethylene responsive element binding protein signature 94 105 IPR001471 GO:0003700|GO:0006355
Bva01g00652 224 PRINTS Ethylene responsive element binding protein signature 133 153 IPR001471 GO:0003700|GO:0006355
Bva01g00652 224 CDD AP2 92 150 IPR001471 GO:0003700|GO:0006355
Bva01g00652 224 Pfam AP2 domain 93 143 IPR001471 GO:0003700|GO:0006355
Bva01g00652 224 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 1 209 - -
Bva01g00652 224 Gene3D AP2/ERF domain 92 152 IPR036955 GO:0003700|GO:0006355
Bva01g00652 224 SMART rav1_2 93 157 IPR001471 GO:0003700|GO:0006355
Bva01g00652 224 SUPERFAMILY DNA-binding domain 93 152 IPR016177 GO:0003677
Bva01g00652 224 MobiDBLite consensus disorder prediction 167 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00652 Bva-Chr1 4772628 4773369 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00652 41 223 AP2-EREBP Transcription Factor Family AT2G44840 49.727 8.63e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Bva01g00652 AP2 5.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00652 K09286 - gmx:100806588 176.792
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g00652 01 4772628 4773369 Bva01g00652 01 4772628 4773369 ECH