Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00646 ATGATTAGTAACCTTGACTCTGATACTGATGCTCTTTTGGAGTCAATCCAACACTATCTGCTTGAAAATGATTCTACTGTTGCCATGGATGTTTTGGAATCAAATCTTGCTAATGATCCATTTCGTCACCTCAGTAGTTCAGGCTTTGGTTTCTCCGATCACACTGTCACTGCCCCTCTTGGAGCAGAGGGAGCGGTGACCAGTACTGAATCAAAGGGAGGGAAAAGAGCAGGTGCGGTGGCGCGTGAAATACACAAGCCTCCAGTATCATGGAAGCATTATAAAGGGGTGAGGCGTAGGCCATGGGGGAAATTTGCGGCGGAGATCagagacccaaaaaaaaacgGCGCCAGAAGATGGCTTGGGACTTACGAGACGGAGGAGGATGCGGCTCTGGCTTATGATAGAGCCGCTTTCGAGATGCGCGGCTCAAAAGCAAAGTTGAATTTTCCGCACTTAATCGGCTCGGATACGCTGCCTGAGCCAGTGAGAGTAGCGATGGGCAAACGTCGTCGATCGGCAGATGATGGTATAGAGGAGCCAAAGAGGAGGAATAACCTAGCTGgcctattaaataaaatagccAGTCAAAAGAGCCTAGGGCAGGAGAGATTATCATTTACTCTTGATCGAGCTTTATTTTACTA 647 0.4575 MISNLDSDTDALLESIQHYLLENDSTVAMDVLESNLANDPFRHLSSSGFGFSDHTVTAPLGAEGAVTSTESKGGKRAGAVAREIHKPPVSWKHYKGVRRRPWGKFAAEIRDPKKNGARRWLGTYETEEDAALAYDRAAFEMRGSKAKLNFPHLIGSDTLPEPVRVAMGKRRRSADDGIEEPKRRNNLAGLLNKIASQKSLGQERLSFTLDRALFY 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00646 215 PRINTS Ethylene responsive element binding protein signature 94 105 IPR001471 GO:0003700|GO:0006355
Bva01g00646 215 PRINTS Ethylene responsive element binding protein signature 133 153 IPR001471 GO:0003700|GO:0006355
Bva01g00646 215 SMART rav1_2 93 157 IPR001471 GO:0003700|GO:0006355
Bva01g00646 215 SUPERFAMILY DNA-binding domain 93 152 IPR016177 GO:0003677
Bva01g00646 215 Pfam AP2 domain 93 143 IPR001471 GO:0003700|GO:0006355
Bva01g00646 215 Gene3D AP2/ERF domain 92 152 IPR036955 GO:0003700|GO:0006355
Bva01g00646 215 PANTHER DNA-BINDING DOMAIN 1 200 IPR044808 GO:0003700|GO:0009873
Bva01g00646 215 ProSiteProfiles AP2/ERF domain profile. 93 151 IPR001471 GO:0003700|GO:0006355
Bva01g00646 215 CDD AP2 92 153 IPR001471 GO:0003700|GO:0006355
Bva01g00646 215 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 1 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00646 Bva-Chr1 4753208 4753855 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00646 41 214 AP2-EREBP Transcription Factor Family AT2G44840 49.721 3.41e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva01g00646 AP2 4.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00646 K09286 - gmx:100806588 177.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g01564 02 18565320 18566132 Bva01g00646 01 4753208 4753855 BWGD
Bva01g00646 01 4753208 4753855 Bva01g00646 01 4753208 4753855 ECH